Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03729 and H281DRAFT_03730 are separated by 102 nucleotidesH281DRAFT_03730 and H281DRAFT_03731 overlap by 1 nucleotidesH281DRAFT_03731 and H281DRAFT_03732 overlap by 11 nucleotidesH281DRAFT_03732 and H281DRAFT_03733 overlap by 4 nucleotides H281DRAFT_03729: H281DRAFT_03729 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 243,275 to 245,014 _03729 H281DRAFT_03730: H281DRAFT_03730 - Predicted small integral membrane protein, at 245,117 to 245,398 _03730 H281DRAFT_03731: H281DRAFT_03731 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 245,398 to 246,210 _03731 H281DRAFT_03732: H281DRAFT_03732 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 246,200 to 247,096 _03732 H281DRAFT_03733: H281DRAFT_03733 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 247,093 to 248,217 _03733
Group Condition H281DRAFT_03729 H281DRAFT_03730 H281DRAFT_03731 H281DRAFT_03732 H281DRAFT_03733
carbon source adipate (C) +0.4 N.D. -0.2 -0.2 -2.0
carbon source butyrate (C) -0.2 N.D. -0.2 +1.0 -2.4
carbon source Protocatechuic Acid (C) -0.1 N.D. +0.0 -1.1 -0.4
carbon source Hexanoic (C) -0.0 N.D. -0.2 -0.8 -0.6
lb LB +0.1 N.D. -0.4 -0.3 -0.7
carbon source succinate (C) -0.1 N.D. -0.0 +0.1 -1.3
carbon source Malonic (C) +0.2 N.D. -0.2 -1.2 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. +0.5 +0.6 -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.4 -0.6 -0.7
carbon source 2-furoic (C) -0.3 N.D. +0.1 +0.4 -1.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 N.D. +0.2 -0.5 -0.7
carbon source Pimelic (C) +0.1 N.D. +0.4 -0.7 -0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 N.D. +0.1 -0.7 +0.2
carbon source Sebacic (C) -0.3 N.D. +0.5 -0.0 -1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 N.D. -0.1 +1.1 -1.4
carbon source D-Galactose (C) -0.2 N.D. +0.2 +0.5 -1.2
carbon source Protocatechuic Acid (C) +0.4 N.D. +0.4 +0.2 -1.5
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.0 -1.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.1 -0.8 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.0 -0.4 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.2 -0.7 +0.8
carbon source D-Glucose 20 mM (C) -0.2 N.D. +0.4 -0.6 +0.7
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 N.D. +0.4 -0.3 +0.6
carbon source D-Glucose (C) -0.1 N.D. +0.2 -0.4 +0.8
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.4 N.D. +0.4 -0.1 +0.9
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.4 N.D. +0.6 -0.3 +0.2
phage Bu1_100 -0.1 N.D. -0.3 +0.9 +0.4
carbon source Hexanoic (C) -0.3 N.D. +0.2 +0.5 +0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 N.D. +0.2 +0.4 +0.8
ecofab LB in EcoFAB_3.5mL +0.0 N.D. +0.4 +0.3 +0.8
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