Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03707 and H281DRAFT_03708 are separated by 308 nucleotidesH281DRAFT_03708 and H281DRAFT_03709 overlap by 4 nucleotidesH281DRAFT_03709 and H281DRAFT_03710 are separated by 71 nucleotidesH281DRAFT_03710 and H281DRAFT_03711 are separated by 2 nucleotides H281DRAFT_03707: H281DRAFT_03707 - transcriptional regulator, IclR family, at 221,069 to 221,875 _03707 H281DRAFT_03708: H281DRAFT_03708 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 222,184 to 223,170 _03708 H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441 _03709 H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820 _03710 H281DRAFT_03711: H281DRAFT_03711 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 225,823 to 226,953 _03711
Group Condition H281DRAFT_03707 H281DRAFT_03708 H281DRAFT_03709 H281DRAFT_03710 H281DRAFT_03711
carbon source 2-Deoxy-D-Ribose (C) -0.9 -0.3 -0.3 +0.2 +0.0
carbon source L-Glutamic (C) -0.2 -0.3 -0.2 -0.3 -0.1
carbon source butyrate (C) -0.2 -0.3 +0.1 -0.5 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.3 -0.4 +0.1 -0.5 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 -0.4 +0.3 -0.2 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.3 -0.7 -0.1 +0.0 +0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -0.3 +0.2 -0.5 +0.0
carbon source Sebacic (C) +0.2 +0.1 +0.2 -1.0 -0.1
carbon source succinate (C) -0.4 +0.1 +0.2 -0.4 -0.2
lb LB -0.4 -0.0 -0.3 +0.2 -0.1
carbon source 2-Deoxy-D-Ribose (C) -0.4 -0.3 +0.3 -0.2 -0.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -0.4 +0.2 -0.1 +0.1
phage Bu1_100 -0.1 -0.8 +0.1 +0.7 -0.4
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.0 -0.7 -0.1 +0.5 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 -0.4 +0.4 -0.5 +0.2
lb LB -0.3 -0.0 -0.1 +0.5 -0.3
phage Bu1_10 -0.1 +0.1 +0.4 -0.9 +0.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -0.3 +0.1 +0.4 +0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 -0.2 +0.1 -0.4 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -0.4 +0.4 -0.1 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 +0.3 +0.1 +0.4 -0.2
carbon source Hexanoic (C) +0.1 +0.0 -0.1 +0.5 -0.3
carbon source D-Glucose (C) -0.3 +0.2 +0.1 +0.6 -0.3
carbon source 3-hydroxybutyric (C) +0.3 +0.1 -0.2 +0.4 -0.1
ecofab LB in EcoFAB_3.5mL +0.2 -0.4 +0.3 +0.4 +0.1
carbon source Protocatechuic Acid (C) +0.1 +0.2 +0.3 +0.5 -0.1
carbon source L-Glutamic (C) +0.3 +0.2 -0.1 +0.5 +0.0
carbon source Hexanoic (C) -0.0 +0.6 +0.4 +0.1 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +0.4 +0.3 +1.0 +0.0
phage Bu1_100 +0.3 +0.3 +0.2 +0.7 +0.1
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