Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03687 and H281DRAFT_03688 are separated by 21 nucleotidesH281DRAFT_03688 and H281DRAFT_03689 overlap by 94 nucleotidesH281DRAFT_03689 and H281DRAFT_03690 are separated by 147 nucleotidesH281DRAFT_03690 and H281DRAFT_03691 are separated by 65 nucleotides H281DRAFT_03687: H281DRAFT_03687 - hypothetical protein, at 202,056 to 202,454 _03687 H281DRAFT_03688: H281DRAFT_03688 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 202,476 to 203,120 _03688 H281DRAFT_03689: H281DRAFT_03689 - Ribosomal protein S18 acetylase RimI, at 203,027 to 203,554 _03689 H281DRAFT_03690: H281DRAFT_03690 - Uncharacterized conserved protein, at 203,702 to 204,151 _03690 H281DRAFT_03691: H281DRAFT_03691 - transcriptional regulator, AraC family, at 204,217 to 205,050 _03691
Group Condition H281DRAFT_03687 H281DRAFT_03688 H281DRAFT_03689 H281DRAFT_03690 H281DRAFT_03691
phage Bu1_100 N.D. -0.9 -0.3 -0.0 -0.2
carbon source D,L-Lactate (C) N.D. -0.4 -0.2 -0.1 -0.4
phage Bu1_100 N.D. -0.8 +0.1 -0.2 -0.0
carbon source Protocatechuic Acid (C) N.D. -0.2 -0.1 +0.1 -0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.1 -0.0 -0.1 -0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.1 +0.1 -0.4 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.1 +0.0 -0.3 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.2 +0.2 -0.4 -0.6
carbon source Gallic Acid (C) N.D. +0.1 -0.3 -0.0 -0.3
carbon source Hexanoic (C) N.D. +0.3 -0.8 -0.4 +0.3
carbon source D-Glucose (C) N.D. -0.2 +0.0 +0.2 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. -0.2 +0.3 +0.1 -0.7
carbon source p-Coumaric (C) N.D. -0.2 -0.1 +0.2 -0.3
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +0.5 -0.1 -0.1 -0.5
carbon source adipate (C) N.D. +0.2 -0.4 -0.4 +0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.3 -0.1 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 +0.7 +0.3 -0.5
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.1 +0.2 +0.2 -0.4
carbon source Hexanoic (C) N.D. -0.4 -0.1 +0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 +0.7 -0.1 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.0 +0.5 +0.2 -0.5
carbon source Sebacic (C) N.D. +0.3 -0.5 +0.4 -0.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.2 +0.2 +0.2 +0.1
carbon source Protocatechuic Acid (C) N.D. +0.4 -0.1 -0.2 +0.2
carbon source Azelaic (C) N.D. +0.2 -0.4 +0.1 +0.7
carbon source butyrate (C) N.D. -0.2 +0.4 +0.1 +0.4
carbon source Malonic (C) N.D. -0.3 +0.2 +0.3 +0.6
carbon source Protocatechuic Acid (C) N.D. +0.4 +0.1 +0.2 +0.1
carbon source Suberic (C) N.D. +0.2 +0.0 +0.2 +0.6
carbon source butyrate (C) N.D. +0.3 +0.2 +0.1 +0.4
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