Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03632 and H281DRAFT_03633 are separated by 14 nucleotidesH281DRAFT_03633 and H281DRAFT_03634 are separated by 439 nucleotidesH281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotidesH281DRAFT_03635 and H281DRAFT_03636 are separated by 49 nucleotides H281DRAFT_03632: H281DRAFT_03632 - transcriptional regulator, IclR family, at 141,665 to 142,675 _03632 H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763 _03633 H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517 _03634 H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830 _03635 H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983 _03636
Group Condition H281DRAFT_03632 H281DRAFT_03633 H281DRAFT_03634 H281DRAFT_03635 H281DRAFT_03636
carbon source Protocatechuic Acid (C) -0.7 -0.1 -2.0 N.D. -0.5
carbon source Protocatechuic Acid (C) -0.3 -0.2 -0.6 N.D. -1.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.5 -0.2 -0.9 N.D. -0.9
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.9 -0.2 -0.8 N.D. -0.6
carbon source 2-Deoxy-D-Ribose (C) -0.2 +0.1 -2.0 N.D. -0.2
carbon source propionate (C) -0.5 -0.0 -1.2 N.D. -0.4
carbon source Dodecandioic (C) -0.5 -0.0 -0.6 N.D. -0.8
carbon source adipate (C) -0.9 +0.2 -0.8 N.D. -0.4
carbon source Gallic Acid (C) -0.2 -0.2 -1.3 N.D. -0.1
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.2 -0.8 N.D. -0.6
carbon source succinate (C) -0.1 +0.0 -1.0 N.D. -0.6
carbon source Malonic (C) -0.3 -0.0 -1.1 N.D. -0.3
carbon source succinate (C) +0.0 +0.1 -1.0 N.D. -0.7
carbon source Malonic (C) -0.6 -0.1 -0.6 N.D. -0.1
carbon source Phenylacetic (C) -0.3 -0.1 -1.1 N.D. +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 +0.0 -0.0 N.D. -0.8
carbon source Malonic (C) -0.3 +0.1 -1.0 N.D. -0.2
carbon source Hexanoic (C) +0.1 +0.1 -1.0 N.D. -0.6
carbon source Azelaic (C) -0.4 -0.2 -1.0 N.D. +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 +0.1 -0.4 N.D. -0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.3 +0.1 -0.8 N.D. -0.3
carbon source adipate (C) -1.0 -0.3 +0.4 N.D. -0.3
carbon source butyrate (C) -0.1 +0.3 -1.0 N.D. +0.4
phage Bu1_100 +0.8 -0.3 -0.1 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 +0.1 +0.9 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 +0.1 +1.0 N.D. +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.4 +0.2 +0.8 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 +1.5 N.D. -0.1
phage Bu1_10 +0.8 +0.1 +1.1 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 +1.5 N.D. +0.3
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