Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	H281DRAFT_03611	H281DRAFT_03612	H281DRAFT_03613	H281DRAFT_03614	H281DRAFT_03615
supernatant	LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-5.4	-2.5	-4.8	-3.7	-3.7
supernatant	LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-5.2	-2.7	-4.9	-3.8	-3.5
carbon source	Phenylacetic (C)	-5.3	-1.6	-1.3	-2.4	-3.7
carbon source	Phenylacetic (C)	-3.8	-1.5	-1.1	-1.6	-3.8
carbon source	p-Coumaric (C)	-2.2	-1.3	-3.0	-2.0	-2.6
carbon source	p-Coumaric (C)	-2.5	-1.5	-2.1	-1.6	-2.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-2.5	-0.7	-1.1	-0.8	-3.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-3.6	-0.7	-1.0	-0.9	-1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-0.9	-1.0	-1.2	-2.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.7	-0.8	-1.4	-0.6	-2.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.0	-0.6	-1.0	-0.9	-2.0
carbon source	butyrate (C)	-4.7	+0.1	+0.1	-0.6	-1.0
carbon source	4-Hydroxybenzoic Acid (C)	-3.1	-0.1	-0.2	-0.6	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2	-0.8	-0.8	-0.6	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.4	-0.2	-0.5	-2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.5	-0.7	-1.0	-1.9
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.6	-0.6	-0.7	-0.5	-1.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8	-0.4	-0.1	-0.5	-1.6
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM	-1.8	-0.4	-0.5	-0.3	-1.2
carbon source	D-Galactose (C)	-1.7	-0.4	-0.9	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-0.5	-0.2	-0.5	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.3	-0.5	-0.5	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.5	-0.4	-0.6	-1.7
ecofab	LB in EcoFAB_3.5mL	-0.6	-0.2	-0.5	-0.4	-1.7
carbon source	L-Glutamic (C)	-0.8	-0.4	-0.5	-0.6	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.9	-0.6	-0.6	-0.3	-0.7
carbon source	Hexanoic (C)	-0.2	+0.2	+0.2	+0.2	-2.6
carbon source	acetate (C)	+1.6	-0.3	-0.2	-0.3	-0.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+1.1	+1.6	+1.5	+1.5	+0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.9	+1.8	+1.6	+1.7	+0.4