Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03608 and H281DRAFT_03609 are separated by 22 nucleotidesH281DRAFT_03609 and H281DRAFT_03610 overlap by 4 nucleotidesH281DRAFT_03610 and H281DRAFT_03611 are separated by 3 nucleotidesH281DRAFT_03611 and H281DRAFT_03612 are separated by 46 nucleotides H281DRAFT_03608: H281DRAFT_03608 - farnesyl-diphosphate farnesyltransferase, at 116,800 to 117,648 _03608 H281DRAFT_03609: H281DRAFT_03609 - squalene-associated FAD-dependent desaturase, at 117,671 to 118,921 _03609 H281DRAFT_03610: H281DRAFT_03610 - squalene-hopene/tetraprenyl-beta-curcumene cyclase, at 118,918 to 120,978 _03610 H281DRAFT_03611: H281DRAFT_03611 - hopanoid-associated phosphorylase, at 120,982 to 121,710 _03611 H281DRAFT_03612: H281DRAFT_03612 - phospholipid-binding lipoprotein MlaA, at 121,757 to 122,827 _03612
Group Condition H281DRAFT_03608 H281DRAFT_03609 H281DRAFT_03610 H281DRAFT_03611 H281DRAFT_03612
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.2 -3.0 -5.4 -2.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.1 -2.3 -5.2 -2.7
carbon source Phenylacetic (C) N.D. +0.3 -2.8 -5.3 -1.6
carbon source p-Coumaric (C) N.D. -0.2 -3.1 -2.2 -1.3
carbon source Phenylacetic (C) N.D. +0.4 -1.6 -3.8 -1.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.0 -1.7 -3.6 -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.2 -2.6 -2.5 -0.7
carbon source p-Coumaric (C) N.D. +0.3 -1.8 -2.5 -1.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.1 -2.4 -1.7 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -1.9 -2.0 -0.6
carbon source butyrate (C) N.D. -0.0 +0.3 -4.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -2.0 -1.3 -0.9
carbon source 3-Hydroxypropionate (C) N.D. -0.4 -2.7 -0.8 -0.1
carbon source 3-Hydroxypropionate (C) N.D. -0.3 -3.1 -0.4 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. -0.7 -0.6 -1.8 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.1 -1.1 -1.6 -0.6
ecofab LB in EcoFAB_3.5mL N.D. -0.2 -2.4 -0.6 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -1.3 -1.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 -1.4 -1.3 -0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -1.0 -1.8 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 -1.2 -1.5 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.2 -2.9 +1.1 -0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.4 +0.6 -3.1 -0.1
carbon source butyrate (C) N.D. +0.0 -2.3 +0.9 +0.1
phage Bu1_100 N.D. +0.4 -2.5 +1.2 +0.1
carbon source Azelaic (C) N.D. -0.1 -1.6 +1.7 -0.2
carbon source acetate (C) N.D. -0.6 -0.7 +1.6 -0.3
phage Bu1_100 N.D. +0.9 -1.5 +0.8 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.2 -0.3 +1.1 +1.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.4 +0.0 +0.9 +1.8
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