Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03598 and H281DRAFT_03599 are separated by 70 nucleotidesH281DRAFT_03599 and H281DRAFT_03600 overlap by 14 nucleotidesH281DRAFT_03600 and H281DRAFT_03601 are separated by 304 nucleotidesH281DRAFT_03601 and H281DRAFT_03602 are separated by 570 nucleotides H281DRAFT_03598: H281DRAFT_03598 - hypothetical protein, at 107,369 to 107,659 _03598 H281DRAFT_03599: H281DRAFT_03599 - Putative zinc-finger, at 107,730 to 107,933 _03599 H281DRAFT_03600: H281DRAFT_03600 - RNA polymerase sigma-70 factor, ECF subfamily, at 107,920 to 108,675 _03600 H281DRAFT_03601: H281DRAFT_03601 - hypothetical protein, at 108,980 to 109,111 _03601 H281DRAFT_03602: H281DRAFT_03602 - NAD(P)H-dependent FMN reductase, at 109,682 to 110,236 _03602
Group Condition H281DRAFT_03598 H281DRAFT_03599 H281DRAFT_03600 H281DRAFT_03601 H281DRAFT_03602
carbon source Azelaic (C) -0.1 -0.6 -0.4 N.D. +0.2
carbon source propionate (C) +0.3 -0.3 -0.6 N.D. -0.3
carbon source Valeric (C) -0.4 -0.0 -0.4 N.D. +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.4 +0.1 -0.0 N.D. -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -0.1 -0.4 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.4 +0.0 -0.7 N.D. -0.2
phage Bu1_100 -0.1 +0.4 -0.4 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.5 -0.1 N.D. +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 +0.7 +0.0 N.D. -0.4
carbon source propionate (C) -0.1 +0.5 -0.1 N.D. -0.4
carbon source adipate (C) +0.1 +0.4 -0.3 N.D. -0.2
carbon source acetate (C) +0.0 +0.7 -0.4 N.D. -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.7 +0.6 -0.1 N.D. +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 +0.6 -0.0 N.D. -0.2
carbon source 2'-Deoxyinosine 10 mM (C) -0.3 -0.1 +0.1 N.D. +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 +0.6 -0.3 N.D. -0.3
carbon source acetate (C) +0.1 +0.8 -0.4 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.2 +0.6 N.D. +0.1
carbon source 3-hydroxybutyric (C) -0.3 +0.5 -0.1 N.D. +0.2
carbon source Dodecandioic (C) -0.1 +0.7 -0.2 N.D. -0.1
carbon source 3-Hydroxypropionate (C) +0.2 +0.2 -0.4 N.D. +0.2
carbon source Phenylacetic (C) +0.2 +0.5 -0.3 N.D. +0.0
carbon source D-Glucose 20 mM (C) -0.4 +0.3 +0.2 N.D. +0.3
carbon source butyrate (C) +0.7 +0.4 -0.1 N.D. -0.2
carbon source 2-Deoxy-D-Ribose (C) -0.1 +0.7 -0.0 N.D. +0.2
carbon source D-Glucose (C) -0.2 +0.4 +0.5 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.2 +0.8 N.D. +0.4
carbon source 2-Deoxy-D-Ribose (C) +0.2 +0.5 +0.2 N.D. +0.2
carbon source adipate (C) +0.5 +0.9 -0.3 N.D. +0.1
phage Bu1_100 +0.4 +0.5 -0.0 N.D. +0.4
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