Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03568 and H281DRAFT_03569 overlap by 4 nucleotidesH281DRAFT_03569 and H281DRAFT_03570 are separated by 598 nucleotidesH281DRAFT_03570 and H281DRAFT_03571 are separated by 59 nucleotidesH281DRAFT_03571 and H281DRAFT_03572 overlap by 4 nucleotides H281DRAFT_03568: H281DRAFT_03568 - hypothetical protein, at 76,485 to 76,637 _03568 H281DRAFT_03569: H281DRAFT_03569 - hypothetical protein, at 76,634 to 76,747 _03569 H281DRAFT_03570: H281DRAFT_03570 - Sugar phosphate permease, at 77,346 to 78,677 _03570 H281DRAFT_03571: H281DRAFT_03571 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 78,737 to 79,702 _03571 H281DRAFT_03572: H281DRAFT_03572 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 79,699 to 80,892 _03572
Group Condition H281DRAFT_03568 H281DRAFT_03569 H281DRAFT_03570 H281DRAFT_03571 H281DRAFT_03572
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. -0.6 -0.5 -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -0.7 -0.3 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. -0.3 +0.1 -1.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. -0.7 -0.2 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. -0.2 -0.6 -0.5
carbon source Dodecandioic (C) N.D. N.D. +0.0 -0.4 -0.7
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -0.4 -0.2 -0.5
carbon source D-Glucose (C) N.D. N.D. -0.2 -0.3 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. +0.3 -0.1 -1.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. -0.6 +0.1 +0.3
carbon source adipate (C) N.D. N.D. +0.5 -0.2 -0.5
carbon source butyrate (C) N.D. N.D. +0.6 +0.0 -0.7
carbon source Azelaic (C) N.D. N.D. -0.8 -0.2 +1.0
carbon source butyrate (C) N.D. N.D. -0.0 -0.5 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. -0.4 -0.1 +0.8
carbon source Protocatechuic Acid (C) N.D. N.D. -0.1 -0.2 +0.8
control NoPhageControl N.D. N.D. +0.4 -0.3 +0.4
carbon source Glycerol (C) N.D. N.D. -0.1 -0.2 +0.9
carbon source p-Coumaric (C) N.D. N.D. -0.1 -0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.2 +0.1 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.1 +0.2 +0.9
carbon source succinate (C) N.D. N.D. +0.4 +0.1 +0.6
phage Bu1_100 N.D. N.D. -0.1 +0.0 +1.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. +0.3 +0.4 +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. +0.0 +0.3 +1.0
phage Bu1_100 N.D. N.D. +0.3 +0.4 +0.8
phage Bu1_10 N.D. N.D. +0.8 +0.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.1 +0.1 +1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.1 +0.3 +1.4
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