Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03545 and H281DRAFT_03546 are separated by 543 nucleotidesH281DRAFT_03546 and H281DRAFT_03547 are separated by 87 nucleotidesH281DRAFT_03547 and H281DRAFT_03548 are separated by 324 nucleotidesH281DRAFT_03548 and H281DRAFT_03549 are separated by 102 nucleotides H281DRAFT_03545: H281DRAFT_03545 - hypothetical protein, at 46,233 to 46,436 _03545 H281DRAFT_03546: H281DRAFT_03546 - hypothetical protein, at 46,980 to 47,240 _03546 H281DRAFT_03547: H281DRAFT_03547 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains, at 47,328 to 48,809 _03547 H281DRAFT_03548: H281DRAFT_03548 - H+/gluconate symporter, at 49,134 to 50,534 _03548 H281DRAFT_03549: H281DRAFT_03549 - reactive intermediate/imine deaminase, at 50,637 to 51,038 _03549
Group Condition H281DRAFT_03545 H281DRAFT_03546 H281DRAFT_03547 H281DRAFT_03548 H281DRAFT_03549
carbon source 3-hydroxybutyric (C) -0.4 N.D. -0.4 -0.6 -0.6
carbon source Protocatechuic Acid (C) -0.6 N.D. -0.3 -0.2 -0.3
carbon source 3-hydroxybutyric (C) -0.1 N.D. -0.2 -0.7 -0.3
carbon source butyrate (C) -0.5 N.D. -0.2 -0.3 -0.3
phage Bu1_10 -0.6 N.D. -0.2 +0.0 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 N.D. -0.4 +0.1 +0.2
carbon source Sebacic (C) -0.8 N.D. +0.3 -0.0 -0.1
carbon source 3-Hydroxypropionate (C) +0.1 N.D. -0.6 +0.2 -0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.3 N.D. -0.4 -0.2 +0.4
carbon source D-Glucose (C) -0.8 N.D. -0.2 +0.2 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.9 N.D. +0.0 +0.0 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.7 N.D. -0.0 -0.0 +0.3
carbon source Gallic Acid (C) +0.3 N.D. -0.2 -0.1 -0.4
carbon source 3-Hydroxypropionate (C) +0.1 N.D. -0.7 +0.3 -0.0
carbon source D-Glucose 20 mM (C) -0.5 N.D. -0.1 -0.1 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 N.D. -0.2 -0.1 +0.4
carbon source Hexanoic (C) -0.7 N.D. +0.4 -0.1 +0.2
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 N.D. +0.0 -0.2 +0.5
carbon source 4-Hydroxybenzoic Acid (C) +0.4 N.D. +0.5 -0.5 -0.5
carbon source 2-Deoxy-D-Ribose (C) +0.5 N.D. -0.2 +0.2 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 N.D. -0.2 -0.2 +0.6
ecofab LB in EcoFAB_3.5mL -0.7 N.D. -0.0 -0.0 +0.8
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. -0.2 +0.0 -0.3
carbon source adipate (C) +0.0 N.D. +0.4 -0.4 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.5 N.D. -0.1 -0.2 +0.5
carbon source succinate (C) +0.6 N.D. -0.2 -0.1 +0.4
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. -0.1 -0.0 -0.0
carbon source Hexanoic (C) -0.1 N.D. +0.4 +0.1 +0.4
carbon source Valeric (C) -0.1 N.D. +0.2 -0.1 +0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.8 N.D. -0.1 -0.1 +0.1
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