Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03478 and H281DRAFT_03479 are separated by 194 nucleotidesH281DRAFT_03479 and H281DRAFT_03480 are separated by 211 nucleotidesH281DRAFT_03480 and H281DRAFT_03481 are separated by 836 nucleotidesH281DRAFT_03481 and H281DRAFT_03482 are separated by 200 nucleotides H281DRAFT_03478: H281DRAFT_03478 - Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family, at 560,606 to 562,165 _03478 H281DRAFT_03479: H281DRAFT_03479 - hypothetical protein, at 562,360 to 562,539 _03479 H281DRAFT_03480: H281DRAFT_03480 - 4-hydroxybenzoate polyprenyltransferase, at 562,751 to 564,172 _03480 H281DRAFT_03481: H281DRAFT_03481 - PAP2 superfamily protein, at 565,009 to 565,344 _03481 H281DRAFT_03482: H281DRAFT_03482 - hypothetical protein, at 565,545 to 567,110 _03482
Group Condition H281DRAFT_03478 H281DRAFT_03479 H281DRAFT_03480 H281DRAFT_03481 H281DRAFT_03482
carbon source butyrate (C) +0.1 N.D. -0.9 N.D. -0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.3 N.D. -1.0 N.D. +0.3
ecofab LB in EcoFAB_3.5mL -0.4 N.D. +0.1 N.D. -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.0 N.D. -0.7 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.4 N.D. -0.6 N.D. +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 N.D. -0.6 N.D. +0.3
carbon source Sebacic (C) +0.4 N.D. -1.1 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.1 N.D. -0.5 N.D. +0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 N.D. +0.5 N.D. -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.0 N.D. -0.5 N.D. +0.5
carbon source 3-Hydroxypropionate (C) +0.2 N.D. +0.3 N.D. -0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.6 N.D. +0.4 N.D. -0.8
carbon source Protocatechuic Acid (C) +0.5 N.D. +0.1 N.D. -0.3
phage Bu1_100 -0.3 N.D. +0.4 N.D. +0.2
phage Bu1_100 +0.2 N.D. -0.4 N.D. +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 N.D. +0.6 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 N.D. +0.6 N.D. +0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.4 N.D. -0.4 N.D. +0.6
carbon source propionate (C) +0.4 N.D. +0.4 N.D. -0.1
carbon source Protocatechuic Acid (C) +0.3 N.D. +0.1 N.D. +0.4
carbon source Gallic Acid (C) +0.3 N.D. +0.4 N.D. +0.2
carbon source adipate (C) +0.5 N.D. -0.1 N.D. +0.5
carbon source Valeric (C) +0.3 N.D. +0.7 N.D. -0.1
control NoPhageControl +0.2 N.D. +0.4 N.D. +0.3
carbon source propionate (C) +0.4 N.D. +0.3 N.D. +0.3
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.0 N.D. +0.4
phage Bu1_10 +0.4 N.D. +0.6 N.D. -0.0
carbon source Azelaic (C) +0.4 N.D. +0.6 N.D. +0.2
carbon source Hexanoic (C) +0.5 N.D. +0.5 N.D. +0.3
carbon source 2-Deoxy-D-Ribose (C) +0.4 N.D. +0.3 N.D. +0.5
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