Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03412 and H281DRAFT_03413 are separated by 374 nucleotidesH281DRAFT_03413 and H281DRAFT_03414 are separated by 154 nucleotidesH281DRAFT_03414 and H281DRAFT_03415 are separated by 121 nucleotidesH281DRAFT_03415 and H281DRAFT_03416 are separated by 328 nucleotides H281DRAFT_03412: H281DRAFT_03412 - Glycine-zipper containing OmpA-like membrane domain-containing protein, at 482,440 to 482,913 _03412 H281DRAFT_03413: H281DRAFT_03413 - high affinity sulphate transporter 1, at 483,288 to 485,081 _03413 H281DRAFT_03414: H281DRAFT_03414 - outer membrane surface antigen, at 485,236 to 485,766 _03414 H281DRAFT_03415: H281DRAFT_03415 - polyphosphate kinase 2, PA0141 family, at 485,888 to 486,703 _03415 H281DRAFT_03416: H281DRAFT_03416 - filamentous hemagglutinin family N-terminal domain-containing protein, at 487,032 to 489,509 _03416
Group Condition H281DRAFT_03412 H281DRAFT_03413 H281DRAFT_03414 H281DRAFT_03415 H281DRAFT_03416
carbon source Azelaic (C) N.D. +0.3 -2.4 -0.6 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.3 -1.4 -0.2 -0.6
phage Bu1_10 N.D. -0.9 -2.0 +0.2 +0.3
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.3 -1.7 +0.0 -0.0
carbon source adipate (C) N.D. +0.3 -1.7 -0.4 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.4 -1.5 +0.0 -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.3 -0.7 -0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 -0.6 +0.2 -0.4
carbon source D-Glucose 20 mM (C) N.D. -0.0 -1.1 -0.1 -0.2
ecofab LB in EcoFAB_3.5mL N.D. -0.2 -1.0 +0.1 -0.2
carbon source Malonic (C) N.D. -0.2 -1.1 -0.1 +0.2
carbon source Protocatechuic Acid (C) N.D. -0.1 -1.2 -0.0 +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -0.1 -1.1 +0.2 -0.2
carbon source propionate (C) N.D. +0.2 -1.0 +0.0 -0.0
carbon source adipate (C) N.D. +0.5 -1.1 -0.8 +0.5
carbon source succinate (C) N.D. +0.1 -1.0 +0.2 +0.0
carbon source Valeric (C) N.D. -0.3 -0.6 -0.0 +0.4
carbon source D-Galactose (C) N.D. +0.2 +0.2 -0.7 -0.2
carbon source Protocatechuic Acid (C) N.D. +0.3 -1.4 +0.5 +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.2 -0.5 +0.3 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. -0.1 -0.7 +0.4 +0.5
phage Bu1_100 N.D. +0.9 -0.8 +0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 +0.9 +0.2 +0.2
carbon source 3-Hydroxypropionate (C) N.D. +0.2 +0.8 +0.2 -0.1
carbon source D,L-Lactate (C) N.D. +0.0 +1.1 -0.1 +0.1
carbon source D-Glucose (C) N.D. +0.6 +0.6 +0.2 -0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.7 -0.2 +0.6 +0.3
carbon source Gallic Acid (C) N.D. +0.7 +0.7 -0.0 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.1 +1.5 +0.3 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.1 +1.4 +0.5 +0.1
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