Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03346 and H281DRAFT_03347 are separated by 140 nucleotidesH281DRAFT_03347 and H281DRAFT_03348 overlap by 4 nucleotidesH281DRAFT_03348 and H281DRAFT_03349 overlap by 4 nucleotidesH281DRAFT_03349 and H281DRAFT_03350 are separated by 17 nucleotides H281DRAFT_03346: H281DRAFT_03346 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 405,644 to 406,516 _03346 H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625 _03347 H281DRAFT_03348: H281DRAFT_03348 - amino acid ABC transporter ATP-binding protein, PAAT family, at 407,622 to 408,398 _03348 H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063 _03349 H281DRAFT_03350: H281DRAFT_03350 - amino acid ABC transporter substrate-binding protein, PAAT family, at 409,081 to 409,836 _03350
Group Condition H281DRAFT_03346 H281DRAFT_03347 H281DRAFT_03348 H281DRAFT_03349 H281DRAFT_03350
phage Bu1_10 -1.3 -0.5 -0.4 N.D. -0.0
carbon source D-Glucose (C) -1.2 -0.1 -0.4 N.D. -0.3
carbon source Hexanoic (C) -0.1 -0.1 -2.0 N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.6 -0.5 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.4 +0.2 -0.8 N.D. -0.7
carbon source acetate (C) -0.6 -0.4 +0.2 N.D. -0.7
phage Bu1_100 -1.5 +0.0 +0.6 N.D. -0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.6 +0.3 +1.1 N.D. -0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.4 -0.3 N.D. -0.2
carbon source adipate (C) +0.4 -0.1 -1.0 N.D. +0.1
carbon source 2-Deoxy-D-Ribose (C) +0.4 +0.1 -0.8 N.D. -0.3
carbon source L-Glutamic (C) +0.5 -0.1 -1.2 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 +0.0 +0.7 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.9 +0.4 +0.7 N.D. -0.2
carbon source Valeric (C) +0.7 -0.3 +0.2 N.D. -0.5
carbon source butyrate (C) -0.8 +0.1 +0.7 N.D. +0.5
carbon source D-Glucose (C) +0.9 -0.0 -0.6 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 -0.3 +0.7 N.D. +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -0.2 +1.1 N.D. -0.4
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 +0.4 +1.0 N.D. -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 +0.1 +1.1 N.D. -0.3
carbon source D,L-Lactate (C) -0.4 +0.1 +1.2 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 +0.0 +1.2 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.4 +0.2 +0.7 N.D. -0.2
lb LB +0.7 -0.1 +0.9 N.D. -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 +0.3 +1.5 N.D. -0.3
carbon source D,L-Lactate (C) -0.1 +0.0 +1.6 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.4 +0.2 +1.3 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +0.4 +1.8 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.1 +2.1 N.D. +0.5
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