Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03342 and H281DRAFT_03343 are separated by 254 nucleotidesH281DRAFT_03343 and H281DRAFT_03344 are separated by 61 nucleotidesH281DRAFT_03344 and H281DRAFT_03345 are separated by 485 nucleotidesH281DRAFT_03345 and H281DRAFT_03346 are separated by 139 nucleotides H281DRAFT_03342: H281DRAFT_03342 - Glyoxylase, beta-lactamase superfamily II, at 400,415 to 401,290 _03342 H281DRAFT_03343: H281DRAFT_03343 - Membrane-bound lytic murein transglycosylase MltF, at 401,545 to 403,167 _03343 H281DRAFT_03344: H281DRAFT_03344 - Predicted ester cyclase, at 403,229 to 403,807 _03344 H281DRAFT_03345: H281DRAFT_03345 - NHL repeat-containing protein, at 404,293 to 405,504 _03345 H281DRAFT_03346: H281DRAFT_03346 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 405,644 to 406,516 _03346
Group Condition H281DRAFT_03342 H281DRAFT_03343 H281DRAFT_03344 H281DRAFT_03345 H281DRAFT_03346
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 -0.4 +0.2 -1.4
carbon source D-Glucose (C) N.D. -0.2 +0.1 -0.3 -1.2
phage Bu1_10 N.D. +0.1 +0.4 -0.8 -1.3
carbon source D,L-Lactate (C) N.D. -0.1 -0.7 -0.0 -0.6
carbon source D-Glucose (C) N.D. +0.1 -0.2 -0.4 -0.7
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.1 +0.0 +0.2 -1.6
phage Bu1_100 N.D. +0.2 +0.3 -0.2 -1.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.1 -1.1 +0.2 -0.2
carbon source p-Coumaric (C) N.D. -0.3 +0.2 -0.3 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -0.6 +0.2 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.2 -0.8 -0.0 -0.4
carbon source Glycerol (C) N.D. +0.0 +0.3 -0.6 -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.2 -0.6 -0.6 +0.5
carbon source Gallic Acid (C) N.D. -0.1 -0.2 -0.9 +0.4
carbon source butyrate (C) N.D. -0.0 -0.4 +0.5 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.0 -0.9 +0.5 -0.1
carbon source 2-furoic (C) N.D. +0.1 +0.4 -0.5 -0.5
carbon source Valeric (C) N.D. +0.4 -0.6 -0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.5 +0.3 -0.4 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.0 +0.3 +0.5 -0.6
phage Bu1_100 N.D. -0.1 +1.3 -0.6 -0.4
carbon source acetate (C) N.D. -0.0 +0.3 +0.6 -0.6
carbon source Hexanoic (C) N.D. +0.3 -0.5 +0.1 +0.8
carbon source adipate (C) N.D. -0.5 +0.3 +0.5 +0.4
lb LB N.D. -0.3 +0.2 +0.5 +0.7
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -0.1 -0.1 +0.6 +0.7
carbon source succinate (C) N.D. -0.1 +0.0 +0.5 +0.7
carbon source Suberic (C) N.D. -0.1 +0.3 +0.5 +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.4 +0.8 +0.1 -0.1
carbon source D-Glucose (C) N.D. +0.2 -0.2 +0.4 +0.9
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