Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03335 and H281DRAFT_03336 overlap by 4 nucleotidesH281DRAFT_03336 and H281DRAFT_03337 are separated by 40 nucleotidesH281DRAFT_03337 and H281DRAFT_03338 are separated by 54 nucleotidesH281DRAFT_03338 and H281DRAFT_03339 are separated by 214 nucleotides H281DRAFT_03335: H281DRAFT_03335 - transcriptional regulator, LysR family, at 392,279 to 393,247 _03335 H281DRAFT_03336: H281DRAFT_03336 - Na+/H+-dicarboxylate symporter, at 393,244 to 394,560 _03336 H281DRAFT_03337: H281DRAFT_03337 - molybdate transport system substrate-binding protein, at 394,601 to 395,383 _03337 H281DRAFT_03338: H281DRAFT_03338 - MFS transporter, MHS family, citrate/tricarballylate:H+ symporter, at 395,438 to 396,736 _03338 H281DRAFT_03339: H281DRAFT_03339 - transcriptional regulator, LysR family, at 396,951 to 397,838 _03339
Group Condition H281DRAFT_03335 H281DRAFT_03336 H281DRAFT_03337 H281DRAFT_03338 H281DRAFT_03339
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.9 -0.7 N.D. -0.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.9 -0.3 N.D. -0.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.9 -0.1 N.D. -0.3 N.D.
control NoPhageControl -0.6 -0.4 N.D. -0.1 N.D.
carbon source Phenylacetic (C) -0.6 -0.0 N.D. -0.5 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.2 N.D. -0.3 N.D.
carbon source Malonic (C) -0.4 -0.2 N.D. -0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 -0.3 N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.2 N.D. -0.4 N.D.
carbon source D-Glucose (C) -0.6 -0.1 N.D. -0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 -0.4 N.D. -0.0 N.D.
phage Bu1_10 -0.4 -0.7 N.D. +0.3 N.D.
carbon source Hexanoic (C) -0.5 -0.3 N.D. +0.2 N.D.
carbon source Protocatechuic Acid (C) -0.9 +0.0 N.D. +0.2 N.D.
carbon source acetate (C) -0.8 +0.2 N.D. +0.0 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.2 -0.8 N.D. +0.1 N.D.
carbon source Azelaic (C) +0.7 -0.5 N.D. -0.7 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.7 -0.1 N.D. +0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.2 N.D. -0.6 N.D.
carbon source Dodecandioic (C) +0.6 -0.6 N.D. -0.2 N.D.
phage Bu1_100 -0.1 -0.6 N.D. +0.6 N.D.
carbon source Protocatechuic Acid (C) +0.3 +0.2 N.D. -0.4 N.D.
carbon source D-Glucose (C) -0.2 +0.5 N.D. -0.2 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 +0.8 N.D. -0.1 N.D.
carbon source 3-hydroxybutyric (C) +0.5 +0.3 N.D. -0.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.3 N.D. +0.8 N.D.
carbon source adipate (C) +0.2 +0.7 N.D. +0.2 N.D.
carbon source D-Glucose (C) +0.5 +0.3 N.D. +0.4 N.D.
carbon source Sebacic (C) +0.9 +0.4 N.D. +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +0.5 N.D. -0.1 N.D.
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