Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03325 and H281DRAFT_03326 are separated by 63 nucleotidesH281DRAFT_03326 and H281DRAFT_03327 are separated by 214 nucleotidesH281DRAFT_03327 and H281DRAFT_03328 are separated by 153 nucleotidesH281DRAFT_03328 and H281DRAFT_03329 are separated by 199 nucleotides H281DRAFT_03325: H281DRAFT_03325 - putative regulatory protein, FmdB family, at 384,578 to 384,793 _03325 H281DRAFT_03326: H281DRAFT_03326 - PAS domain S-box-containing protein, at 384,857 to 387,025 _03326 H281DRAFT_03327: H281DRAFT_03327 - Protein of unknown function (DUF2795), at 387,240 to 387,461 _03327 H281DRAFT_03328: H281DRAFT_03328 - hypothetical protein, at 387,615 to 388,034 _03328 H281DRAFT_03329: H281DRAFT_03329 - hypothetical protein, at 388,234 to 388,491 _03329
Group Condition H281DRAFT_03325 H281DRAFT_03326 H281DRAFT_03327 H281DRAFT_03328 H281DRAFT_03329
carbon source Valeric (C) N.D. -0.3 N.D. -0.8 N.D.
carbon source Azelaic (C) N.D. -1.0 N.D. -0.0 N.D.
carbon source acetate (C) N.D. -0.1 N.D. -0.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. -0.2 N.D. -0.7 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. +0.1 N.D. -0.9 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.6 N.D. -0.2 N.D.
carbon source Sebacic (C) N.D. +0.0 N.D. -0.8 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.5 N.D. -0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.1 N.D. -0.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.2 N.D. -0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. +0.1 N.D. -0.7 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.6 N.D. +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.4 N.D. +0.3 N.D.
phage Bu1_100 N.D. -0.3 N.D. +0.3 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.5 N.D. -0.5 N.D.
carbon source Phenylacetic (C) N.D. -0.4 N.D. +0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. +0.4 N.D. -0.3 N.D.
phage Bu1_100 N.D. -0.3 N.D. +0.5 N.D.
carbon source Malonic (C) N.D. -0.2 N.D. +0.5 N.D.
carbon source Protocatechuic Acid (C) N.D. -0.2 N.D. +0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.7 N.D. -0.3 N.D.
carbon source butyrate (C) N.D. -0.2 N.D. +0.6 N.D.
carbon source Malonic (C) N.D. -0.1 N.D. +0.8 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.2 N.D. +0.5 N.D.
carbon source Malonic (C) N.D. +0.4 N.D. +0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +0.1 N.D. +0.7 N.D.
carbon source D-Glucose 20 mM (C) N.D. +0.4 N.D. +0.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.5 N.D. +0.4 N.D.
carbon source L-Glutamic (C) N.D. +0.3 N.D. +0.7 N.D.
ecofab LB in EcoFAB_3.5mL N.D. +0.6 N.D. +0.4 N.D.
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