Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03305 and H281DRAFT_03306 are separated by 31 nucleotidesH281DRAFT_03306 and H281DRAFT_03307 overlap by 4 nucleotidesH281DRAFT_03307 and H281DRAFT_03308 overlap by 28 nucleotidesH281DRAFT_03308 and H281DRAFT_03309 are separated by 12 nucleotides H281DRAFT_03305: H281DRAFT_03305 - Acetyltransferases, at 368,272 to 368,781 _03305 H281DRAFT_03306: H281DRAFT_03306 - Cytochrome c, mono- and diheme variants, at 368,813 to 370,117 _03306 H281DRAFT_03307: H281DRAFT_03307 - Cytochrome c oxidase assembly factor CtaG, at 370,114 to 371,082 _03307 H281DRAFT_03308: H281DRAFT_03308 - hypothetical protein, at 371,055 to 371,387 _03308 H281DRAFT_03309: H281DRAFT_03309 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 371,400 to 372,050 _03309
Group Condition H281DRAFT_03305 H281DRAFT_03306 H281DRAFT_03307 H281DRAFT_03308 H281DRAFT_03309
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 -1.0 -0.8 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 -0.4 -1.1 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.7 -0.6 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.7 +0.1 -0.8 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.5 -0.4 -0.5 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -1.0 +0.2 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.1 -0.7 -0.5 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -1.4 +0.2 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -1.1 +0.4 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -1.2 +0.1 N.D. N.D.
phage Bu1_100 -0.1 -1.0 +0.3 N.D. N.D.
carbon source Valeric (C) +0.6 -1.1 -0.3 N.D. N.D.
carbon source Sebacic (C) -0.5 +0.3 -0.5 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 -1.1 +0.0 N.D. N.D.
carbon source acetate (C) +0.4 -0.5 -0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 -1.2 +0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 -0.6 -0.2 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 -0.8 +0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.8 -0.6 -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.1 +0.6 N.D. N.D.
ecofab LB in EcoFAB_3.5mL +0.4 -0.7 +0.3 N.D. N.D.
carbon source D-Glucose 20 mM (C) +0.1 -0.5 +0.6 N.D. N.D.
carbon source D-Galactose (C) -0.5 +0.2 +0.6 N.D. N.D.
carbon source D-Glucose 20 mM (C) +0.3 -0.6 +0.7 N.D. N.D.
carbon source Hexanoic (C) +0.3 +0.7 -0.5 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.5 -0.5 +0.4 N.D. N.D.
carbon source D-Glucose (C) -0.4 +0.3 +0.6 N.D. N.D.
carbon source propionate (C) +0.4 -0.4 +0.5 N.D. N.D.
carbon source Valeric (C) +0.3 +1.0 -0.3 N.D. N.D.
carbon source butyrate (C) +1.0 +0.1 +0.2 N.D. N.D.
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