Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03249 and H281DRAFT_03250 are separated by 23 nucleotidesH281DRAFT_03250 and H281DRAFT_03251 overlap by 4 nucleotidesH281DRAFT_03251 and H281DRAFT_03252 are separated by 99 nucleotidesH281DRAFT_03252 and H281DRAFT_03253 are separated by 8 nucleotides H281DRAFT_03249: H281DRAFT_03249 - hypothetical protein, at 307,630 to 308,046 _03249 H281DRAFT_03250: H281DRAFT_03250 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 308,070 to 308,597 _03250 H281DRAFT_03251: H281DRAFT_03251 - transcriptional regulator, ArsR family, at 308,594 to 308,929 _03251 H281DRAFT_03252: H281DRAFT_03252 - 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-), at 309,029 to 309,832 _03252 H281DRAFT_03253: H281DRAFT_03253 - 2-oxohept-3-enedioate hydratase, at 309,841 to 310,644 _03253
Group Condition H281DRAFT_03249 H281DRAFT_03250 H281DRAFT_03251 H281DRAFT_03252 H281DRAFT_03253
carbon source Malonic (C) N.D. N.D. N.D. -0.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.9 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.8 -0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.7 -0.4
carbon source 4-Methyl-2-oxopentanoic (C) N.D. N.D. N.D. -0.4 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. N.D. -0.2 -0.7
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. N.D. -0.7 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. N.D. -0.6 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. N.D. N.D. -0.5 -0.3
carbon source Valeric (C) N.D. N.D. N.D. -1.2 +0.4
carbon source Hydroxy-L-Proline (C) N.D. N.D. N.D. -0.7 -0.1
carbon source 2-furoic (C) N.D. N.D. N.D. -0.5 -0.2
carbon source 2-furoic (C) N.D. N.D. N.D. -0.5 -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. N.D. -0.4 -0.3
carbon source L-Glutamic (C) N.D. N.D. N.D. -0.7 +0.3
carbon source D-Glucose (C) N.D. N.D. N.D. -0.7 +0.4
carbon source Azelaic (C) N.D. N.D. N.D. -0.5 +0.4
carbon source D-Glucose (C) N.D. N.D. N.D. +0.5 -0.3
carbon source Phenylacetic (C) N.D. N.D. N.D. +0.7 -0.2
carbon source D,L-Lactate (C) N.D. N.D. N.D. +0.8 -0.2
lb LB N.D. N.D. N.D. +0.7 -0.2
carbon source Hexanoic (C) N.D. N.D. N.D. +0.8 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. +0.8 -0.1
carbon source succinate (C) N.D. N.D. N.D. +0.5 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. +0.3 +0.4
carbon source Valeric (C) N.D. N.D. N.D. +0.1 +0.6
carbon source acetate (C) N.D. N.D. N.D. +0.5 +0.3
lb LB N.D. N.D. N.D. +0.7 +0.2
carbon source propionate (C) N.D. N.D. N.D. +0.5 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. N.D. +1.1 +0.5
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