Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03117 and H281DRAFT_03118 overlap by 8 nucleotidesH281DRAFT_03118 and H281DRAFT_03119 overlap by 4 nucleotidesH281DRAFT_03119 and H281DRAFT_03120 are separated by 23 nucleotidesH281DRAFT_03120 and H281DRAFT_03121 are separated by 27 nucleotides H281DRAFT_03117: H281DRAFT_03117 - sarcosine oxidase subunit beta, at 150,084 to 151,211 _03117 H281DRAFT_03118: H281DRAFT_03118 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 151,204 to 152,637 _03118 H281DRAFT_03119: H281DRAFT_03119 - NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G), at 152,634 to 153,002 _03119 H281DRAFT_03120: H281DRAFT_03120 - putative spermidine/putrescine transport system permease protein, at 153,026 to 153,820 _03120 H281DRAFT_03121: H281DRAFT_03121 - putative spermidine/putrescine transport system permease protein, at 153,848 to 154,762 _03121
Group Condition H281DRAFT_03117 H281DRAFT_03118 H281DRAFT_03119 H281DRAFT_03120 H281DRAFT_03121
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.9 -1.2 N.D. -0.3 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.8 -1.6 N.D. +0.1 N.D.
phage Bu1_100 -0.1 -0.8 N.D. -1.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.7 -1.2 N.D. -0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.8 -0.7 N.D. -0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.7 -0.9 N.D. -0.0 N.D.
carbon source adipate (C) -0.6 -0.6 N.D. -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.9 -0.1 N.D. -0.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.5 -0.9 N.D. -0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.6 -1.1 N.D. +0.2 N.D.
phage Bu1_100 -1.2 +0.3 N.D. -0.5 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.2 -0.5 N.D. -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.4 N.D. -0.7 N.D.
control NoPhageControl +0.6 -1.7 N.D. -0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.8 -0.5 N.D. -0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.7 -0.7 N.D. +0.2 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 -1.2 N.D. +0.1 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.8 -0.5 N.D. +0.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.6 -1.5 N.D. -0.2 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.8 +0.4 N.D. -0.3 N.D.
carbon source succinate (C) -0.0 -0.8 N.D. +0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 +0.8 N.D. -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 +0.8 N.D. +0.1 N.D.
carbon source Glycerol (C) -0.5 +0.7 N.D. +0.5 N.D.
carbon source D,L-Lactate (C) -0.3 +0.7 N.D. +0.3 N.D.
lb LB +0.1 +1.0 N.D. -0.3 N.D.
carbon source Malonic (C) -0.2 +1.1 N.D. +0.4 N.D.
carbon source butyrate (C) +0.4 +0.6 N.D. +0.4 N.D.
carbon source L-Glutamic (C) +0.5 +0.7 N.D. +0.4 N.D.
carbon source Gallic Acid (C) +0.3 +0.8 N.D. +0.7 N.D.
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