Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03110 and H281DRAFT_03111 are separated by 16 nucleotidesH281DRAFT_03111 and H281DRAFT_03112 are separated by 7 nucleotidesH281DRAFT_03112 and H281DRAFT_03113 are separated by 129 nucleotidesH281DRAFT_03113 and H281DRAFT_03114 are separated by 69 nucleotides H281DRAFT_03110: H281DRAFT_03110 - concentrative nucleoside transporter, CNT family, at 144,841 to 146,118 _03110 H281DRAFT_03111: H281DRAFT_03111 - cytidine deaminase, at 146,135 to 146,524 _03111 H281DRAFT_03112: H281DRAFT_03112 - Inosine-uridine nucleoside N-ribohydrolase, at 146,532 to 147,497 _03112 H281DRAFT_03113: H281DRAFT_03113 - 2-dehydropantoate 2-reductase, at 147,627 to 148,562 _03113 H281DRAFT_03114: H281DRAFT_03114 - hypothetical protein, at 148,632 to 148,931 _03114
Group Condition H281DRAFT_03110 H281DRAFT_03111 H281DRAFT_03112 H281DRAFT_03113 H281DRAFT_03114
carbon source Phenylacetic (C) -0.7 N.D. -0.3 -0.2 -0.6
carbon source butyrate (C) -1.0 N.D. -0.1 +0.1 -0.5
phage Bu1_10 +0.4 N.D. -0.3 -0.4 -1.1
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. -0.1 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.3 -0.3 +0.1
carbon source D-Glucose (C) -0.5 N.D. -0.4 -0.7 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.2 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. -0.1 +0.2 -0.1
carbon source D-Glucose 20 mM (C) -1.1 N.D. +0.2 -0.0 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. -0.2 +0.3 -0.1
carbon source Hexanoic (C) -0.4 N.D. -0.0 +0.4 -0.7
phage Bu1_100 +0.2 N.D. -1.1 +0.2 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 N.D. -0.2 +0.5 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.7 N.D. +0.4 -0.2 -0.0
carbon source 2-furoic (C) -0.5 N.D. -0.2 -0.2 +0.6
carbon source D-Glucose (C) +0.5 N.D. -0.4 -0.5 +0.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.0 N.D. +0.2 +0.5 -1.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.8 N.D. +0.1 -0.0 +0.4
ecofab LB in EcoFAB_3.5mL -0.5 N.D. -0.2 +0.3 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.7 N.D. -0.3 +0.9 -0.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.4 N.D. +0.2 -0.2 +0.3
carbon source Protocatechuic Acid (C) -0.6 N.D. +0.2 +0.1 +0.3
carbon source Azelaic (C) +0.5 N.D. +0.3 -1.2 +0.4
carbon source Phenylacetic (C) +0.5 N.D. -0.3 -0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.7 N.D. +0.0 -0.1 -0.3
carbon source Valeric (C) +0.5 N.D. -0.0 -0.4 +0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.3 N.D. +0.2 +0.5 +0.3
phage Bu1_100 +0.3 N.D. -0.6 +0.8 +0.3
carbon source butyrate (C) +0.4 N.D. +0.4 +0.7 +0.0
carbon source Malonic (C) +0.6 N.D. +0.4 +1.0 -0.3
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