Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03060 and H281DRAFT_03061 are separated by 303 nucleotidesH281DRAFT_03061 and H281DRAFT_03062 are separated by 186 nucleotidesH281DRAFT_03062 and H281DRAFT_03063 are separated by 171 nucleotidesH281DRAFT_03063 and H281DRAFT_03064 are separated by 32 nucleotides H281DRAFT_03060: H281DRAFT_03060 - putative addiction module antidote protein, CC2985 family, at 93,678 to 93,899 _03060 H281DRAFT_03061: H281DRAFT_03061 - hypothetical protein, at 94,203 to 94,553 _03061 H281DRAFT_03062: H281DRAFT_03062 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 94,740 to 95,186 _03062 H281DRAFT_03063: H281DRAFT_03063 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 95,358 to 96,155 _03063 H281DRAFT_03064: H281DRAFT_03064 - Uncharacterized conserved protein, at 96,188 to 96,526 _03064
Group Condition H281DRAFT_03060 H281DRAFT_03061 H281DRAFT_03062 H281DRAFT_03063 H281DRAFT_03064
phage Bu1_100 N.D. -0.5 +0.2 -0.2 -0.7
carbon source D-Glucose (C) N.D. -0.4 +0.1 +0.2 -0.6
phage Bu1_100 N.D. -0.3 -0.2 +0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.4 +0.0 +0.5 -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.2 +0.1 +0.5 -0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.6 -0.4 -0.2 -0.3
carbon source Protocatechuic Acid (C) N.D. -0.5 +0.3 -0.3 +0.2
carbon source Azelaic (C) N.D. -1.0 +0.3 +0.1 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.7 -0.4 -0.4 +0.0
carbon source propionate (C) N.D. -0.6 +0.2 -0.1 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.1 +0.4 +0.2 -0.5
carbon source succinate (C) N.D. -0.6 +0.1 +0.1 +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.5 -0.2 +0.1 -0.3
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +0.7 -0.3 +0.2 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.9 -0.1 -0.2 -0.3
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.8 +0.1 +0.0 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +0.9 -0.1 -0.3 -0.0
carbon source Hexanoic (C) N.D. +0.1 +0.3 -0.6 +0.8
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.9 -0.1 +0.1 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.3 +0.6 +0.3 +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +1.0 -0.2 -0.2 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +1.0 -0.2 -0.1 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +1.1 -0.2 +0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.3 -0.2 +0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +1.0 -0.1 +0.3 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. +1.1 +0.0 -0.1 +0.0
carbon source D-Glucose 20 mM (C) N.D. +0.9 +0.2 +0.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.0 +0.1 +0.2 +0.8
carbon source Malonic (C) N.D. +0.4 +0.6 +0.3 -0.2
carbon source adipate (C) N.D. +0.5 +0.2 +0.0 +0.8
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