Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02948 and H281DRAFT_02949 are separated by 89 nucleotidesH281DRAFT_02949 and H281DRAFT_02950 are separated by 181 nucleotidesH281DRAFT_02950 and H281DRAFT_02951 are separated by 16 nucleotidesH281DRAFT_02951 and H281DRAFT_02952 are separated by 56 nucleotides H281DRAFT_02948: H281DRAFT_02948 - metabolite-proton symporter, at 561,456 to 562,838 _02948 H281DRAFT_02949: H281DRAFT_02949 - Xaa-Pro aminopeptidase, at 562,928 to 564,094 _02949 H281DRAFT_02950: H281DRAFT_02950 - DNA-binding transcriptional regulator, LysR family, at 564,276 to 565,265 _02950 H281DRAFT_02951: H281DRAFT_02951 - 5-deoxyglucuronate isomerase, at 565,282 to 566,112 _02951 H281DRAFT_02952: H281DRAFT_02952 - fructuronate reductase, at 566,169 to 567,662 _02952
Group Condition H281DRAFT_02948 H281DRAFT_02949 H281DRAFT_02950 H281DRAFT_02951 H281DRAFT_02952
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -0.9 -0.8 +0.6 -0.8
carbon source Gallic Acid (C) -0.7 -0.0 -0.2 +0.3 -0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.3 -0.2 +0.1 -0.4 -0.8
carbon source adipate (C) +0.1 -0.2 -0.5 +0.3 -0.6
carbon source Glycerol (C) -0.6 -0.4 +0.5 -0.2 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.6 -0.3 -0.4 +0.1 +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 +0.2 -0.2 -0.7 -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 +0.5 -0.5 -0.8 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 -0.5 -0.6 +0.7 -0.7
carbon source Valeric (C) -0.4 +0.0 -0.7 +0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.3 -0.5 -0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.2 -1.0 -0.1 +0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.9 -0.2 +0.9 -0.1 +0.3
carbon source Azelaic (C) -0.2 +0.2 -0.5 +0.7 -0.2
carbon source Hexanoic (C) -0.1 +0.0 -0.7 +0.4 +0.5
carbon source 2'-Deoxyinosine 10 mM (C) -0.9 +0.1 +0.5 +0.0 +0.4
carbon source acetate (C) -0.6 +0.2 +0.4 +0.4 -0.2
carbon source Protocatechuic Acid (C) -0.3 +0.1 +0.2 +0.6 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.3 -0.2 -0.5 +0.5
carbon source 2'-Deoxyinosine 10 mM (C) -0.7 +0.1 +0.1 +0.4 +0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.9 +0.3 +0.5 -0.0 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.7 -0.3 +0.3 +0.2 -0.3
ecofab LB in EcoFAB_3.5mL -0.6 +0.2 +0.2 +0.2 +0.7
carbon source Dodecandioic (C) -0.4 +0.2 +0.1 +0.4 +0.6
carbon source butyrate (C) -0.5 -0.1 +0.3 +0.9 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 -0.2 +1.1 +0.5 +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -0.0 +0.5 +0.3 +0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.5 +0.2 +0.6 +0.2 +0.5
phage Bu1_100 +0.4 +0.2 -0.7 +0.2 +1.0
phage Bu1_100 +0.4 +0.0 -0.0 -0.2 +1.0
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