Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02931 and H281DRAFT_02932 are separated by 481 nucleotidesH281DRAFT_02932 and H281DRAFT_02933 are separated by 159 nucleotidesH281DRAFT_02933 and H281DRAFT_02934 are separated by 31 nucleotidesH281DRAFT_02934 and H281DRAFT_02935 are separated by 119 nucleotides H281DRAFT_02931: H281DRAFT_02931 - Uncharacterized conserved protein YodC, DUF2158 family, at 542,479 to 542,748 _02931 H281DRAFT_02932: H281DRAFT_02932 - Major Facilitator Superfamily protein, at 543,230 to 543,679 _02932 H281DRAFT_02933: H281DRAFT_02933 - Tetratricopeptide repeat-containing protein, at 543,839 to 544,753 _02933 H281DRAFT_02934: H281DRAFT_02934 - hypothetical protein, at 544,785 to 545,087 _02934 H281DRAFT_02935: H281DRAFT_02935 - ATP-dependent transcriptional regulator, at 545,207 to 548,404 _02935
Group Condition H281DRAFT_02931 H281DRAFT_02932 H281DRAFT_02933 H281DRAFT_02934 H281DRAFT_02935
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.3 -0.1 -0.2 -0.8 +0.0
carbon source Valeric (C) +0.1 -0.3 -0.0 -0.9 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 -0.1 +0.0 -0.6 -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -0.1 +0.0 -1.0 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -0.1 -0.0 -0.9 -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.7 +0.0 +0.1 -0.4 +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.2 -0.2 -0.2 -0.5 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.2 +0.2 -0.9 -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.3 -0.1 +0.0 +0.7 -0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 -0.1 +0.2 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.3 -0.1 +0.3 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.7 +0.2 +0.0 -0.5 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 -0.3 +0.0 +0.2 -0.1
carbon source Glycerol (C) +0.5 +0.2 +0.1 -0.4 -0.1
carbon source Azelaic (C) +0.4 +0.0 -0.2 +0.4 -0.2
carbon source 3-hydroxybutyric (C) +0.8 +0.0 +0.2 -0.5 -0.0
carbon source 2'-Deoxyinosine 10 mM (C) +0.7 +0.1 +0.2 -0.5 -0.0
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 +0.1 +0.1 -0.3 +0.0
carbon source Glycerol (C) +0.9 +0.2 +0.1 -0.1 -0.1
carbon source propionate (C) +0.8 +0.1 +0.1 -0.1 +0.1
carbon source adipate (C) +0.6 -0.2 +0.2 +0.2 +0.1
carbon source Hydroxy-L-Proline (C) +1.2 +0.2 +0.0 -0.2 -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.5 +0.1 +0.0 +0.5 -0.1
carbon source 3-Hydroxypropionate (C) +0.7 +0.3 +0.1 +0.1 -0.1
carbon source D-Glucose (C) +0.5 +0.3 +0.2 +0.0 +0.2
carbon source Hexanoic (C) +0.5 +0.5 +0.1 +0.0 +0.2
carbon source D,L-Lactate (C) +0.6 +0.3 -0.0 +0.4 +0.1
carbon source Sebacic (C) +0.8 +0.5 -0.0 -0.1 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 +0.0 -0.1 +0.6 +0.2
carbon source D,L-Lactate (C) +0.7 +0.1 +0.1 +0.6 +0.1
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