Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02898 and H281DRAFT_02899 are separated by 1402 nucleotidesH281DRAFT_02899 and H281DRAFT_02900 are separated by 375 nucleotidesH281DRAFT_02900 and H281DRAFT_02901 are separated by 26 nucleotidesH281DRAFT_02901 and H281DRAFT_02902 overlap by 4 nucleotides H281DRAFT_02898: H281DRAFT_02898 - hypothetical protein, at 501,224 to 501,523 _02898 H281DRAFT_02899: H281DRAFT_02899 - DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains, at 502,926 to 504,377 _02899 H281DRAFT_02900: H281DRAFT_02900 - Small-conductance mechanosensitive channel, at 504,753 to 507,464 _02900 H281DRAFT_02901: H281DRAFT_02901 - DNA excision repair protein ERCC-2, at 507,491 to 509,755 _02901 H281DRAFT_02902: H281DRAFT_02902 - VRR-NUC domain-containing protein, at 509,752 to 511,575 _02902
Group Condition H281DRAFT_02898 H281DRAFT_02899 H281DRAFT_02900 H281DRAFT_02901 H281DRAFT_02902
phage Bu1_10 N.D. -0.2 -0.5 -0.0 -0.3
carbon source Protocatechuic Acid (C) N.D. -0.6 +0.1 -0.0 -0.4
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.2 -0.1 -0.3 -0.2
phage Bu1_100 N.D. -0.0 -0.7 +0.2 -0.2
carbon source propionate (C) N.D. -0.3 -0.3 -0.1 -0.1
carbon source Malonic (C) N.D. -0.2 -0.3 -0.1 -0.1
carbon source 2-furoic (C) N.D. -0.3 -0.0 -0.2 -0.2
carbon source Protocatechuic Acid (C) N.D. -0.2 -0.2 -0.3 +0.1
carbon source p-Coumaric (C) N.D. -0.2 -0.2 -0.3 +0.1
carbon source Sebacic (C) N.D. +0.1 +0.1 -0.1 -0.8
carbon source butyrate (C) N.D. -0.3 +0.1 -0.0 -0.3
carbon source propionate (C) N.D. -0.2 +0.2 -0.3 -0.2
carbon source Gallic Acid (C) N.D. -0.1 +0.3 -0.3 -0.4
carbon source Gallic Acid (C) N.D. -0.2 -0.4 -0.0 +0.1
carbon source Malonic (C) N.D. -0.2 -0.3 -0.1 +0.1
carbon source 3-Hydroxypropionate (C) N.D. -0.3 -0.0 -0.2 +0.2
carbon source Hexanoic (C) N.D. -0.3 +0.2 -0.1 -0.2
carbon source butyrate (C) N.D. +0.1 +0.1 -0.5 +0.0
carbon source succinate (C) N.D. -0.5 +0.3 +0.1 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.4 +0.2 +0.1 -0.1
carbon source Protocatechuic Acid (C) N.D. +0.1 +0.2 -0.2 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -0.2 +0.2 +0.2 -0.3
phage Bu1_100 N.D. -0.1 -0.3 +0.2 +0.1
carbon source Valeric (C) N.D. -0.3 +0.3 -0.0 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.0 +0.3 +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 +0.1 -0.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.5 +0.2 +0.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.0 -0.2 +0.4
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.3 +0.2 -0.1 +0.2
carbon source Valeric (C) N.D. +0.2 +0.2 +0.2 +0.1
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