Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02895 and H281DRAFT_02896 are separated by 56 nucleotidesH281DRAFT_02896 and H281DRAFT_02897 are separated by 161 nucleotidesH281DRAFT_02897 and H281DRAFT_02898 are separated by 157 nucleotidesH281DRAFT_02898 and H281DRAFT_02899 are separated by 1402 nucleotides H281DRAFT_02895: H281DRAFT_02895 - prolyl 4-hydroxylase, at 498,024 to 498,920 _02895 H281DRAFT_02896: H281DRAFT_02896 - Ketosteroid isomerase-related protein, at 498,977 to 499,456 _02896 H281DRAFT_02897: H281DRAFT_02897 - nicotinamide phosphoribosyltransferase, at 499,618 to 501,066 _02897 H281DRAFT_02898: H281DRAFT_02898 - hypothetical protein, at 501,224 to 501,523 _02898 H281DRAFT_02899: H281DRAFT_02899 - DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains, at 502,926 to 504,377 _02899
Group Condition H281DRAFT_02895 H281DRAFT_02896 H281DRAFT_02897 H281DRAFT_02898 H281DRAFT_02899
carbon source L-Glutamic (C) -0.3 N.D. -0.4 N.D. -0.2
carbon source Valeric (C) -0.5 N.D. +0.0 N.D. -0.3
carbon source Gallic Acid (C) -0.4 N.D. -0.3 N.D. -0.1
carbon source Malonic (C) -0.1 N.D. -0.5 N.D. -0.2
carbon source propionate (C) -0.3 N.D. -0.4 N.D. -0.1
carbon source succinate (C) +0.1 N.D. -0.4 N.D. -0.5
carbon source Protocatechuic Acid (C) -0.1 N.D. -0.0 N.D. -0.6
carbon source adipate (C) -0.2 N.D. -0.5 N.D. +0.0
carbon source 2'-Deoxyinosine 10 mM (C) -0.3 N.D. -0.3 N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 N.D. +0.1 N.D. -0.2
carbon source Gallic Acid (C) -0.3 N.D. -0.1 N.D. -0.2
lb LB -0.4 N.D. -0.2 N.D. -0.1
carbon source Hexanoic (C) +0.1 N.D. -0.4 N.D. -0.3
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 N.D. -0.2 N.D. +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.5 N.D. +0.1 N.D. -0.1
carbon source adipate (C) +0.4 N.D. -0.7 N.D. +0.0
carbon source 2-Deoxy-D-Ribose (C) +0.4 N.D. -0.5 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 N.D. -0.2 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -0.4 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 N.D. -0.4 N.D. +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 N.D. -0.1 N.D. +0.4
carbon source Sebacic (C) +0.4 N.D. -0.3 N.D. +0.1
carbon source D-Glucose (C) +0.3 N.D. +0.2 N.D. -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 N.D. -0.2 N.D. +0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. +0.3 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. -0.1 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. +0.1 N.D. +0.2
carbon source Valeric (C) +0.1 N.D. +0.3 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. -0.0 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.0 N.D. +0.5
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