Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02890 and H281DRAFT_02891 are separated by 123 nucleotidesH281DRAFT_02891 and H281DRAFT_02892 are separated by 216 nucleotidesH281DRAFT_02892 and H281DRAFT_02893 are separated by 416 nucleotidesH281DRAFT_02893 and H281DRAFT_02894 are separated by 18 nucleotides H281DRAFT_02890: H281DRAFT_02890 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 491,875 to 492,438 _02890 H281DRAFT_02891: H281DRAFT_02891 - transcriptional regulator, propionate catabolism operon regulatory protein, at 492,562 to 494,562 _02891 H281DRAFT_02892: H281DRAFT_02892 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 494,779 to 495,660 _02892 H281DRAFT_02893: H281DRAFT_02893 - drug resistance transporter, EmrB/QacA subfamily, at 496,077 to 497,516 _02893 H281DRAFT_02894: H281DRAFT_02894 - Acetyltransferases, at 497,535 to 497,981 _02894
Group Condition H281DRAFT_02890 H281DRAFT_02891 H281DRAFT_02892 H281DRAFT_02893 H281DRAFT_02894
carbon source propionate (C) +0.4 -1.3 -3.0 -0.1 N.D.
carbon source propionate (C) +1.0 -1.2 -3.4 -0.1 N.D.
carbon source propionate (C) +0.2 -1.2 -1.4 +0.0 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.1 -0.5 -0.2 -0.2 N.D.
carbon source propionate (C) +0.0 -0.8 -1.0 +0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.9 -0.7 -0.0 -0.1 N.D.
carbon source Valeric (C) +0.6 +0.0 -1.7 -0.5 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -1.1 -0.4 +0.1 -0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.8 -0.7 +0.0 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 +0.0 -0.1 -0.3 N.D.
phage Bu1_10 -0.4 -0.0 -0.6 -0.2 N.D.
carbon source Protocatechuic Acid (C) -0.0 -0.5 -0.8 +0.1 N.D.
carbon source 3-Hydroxypropionate (C) -0.5 -0.3 -0.2 -0.3 N.D.
carbon source Valeric (C) +0.8 -0.7 -1.2 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.4 -0.2 -0.5 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -1.1 +0.2 -0.0 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.0 -0.9 +0.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.8 -0.3 +0.4 -0.2 N.D.
carbon source Hydroxy-L-Proline (C) -0.3 -0.5 +0.3 -0.2 N.D.
carbon source butyrate (C) +0.3 -0.0 -1.1 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.2 -0.6 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.4 -1.0 +0.2 N.D.
phage Bu1_100 +0.4 +0.1 -0.9 +0.1 N.D.
carbon source D-Glucose (C) +0.4 +0.3 -0.7 -0.1 N.D.
carbon source adipate (C) +0.8 +0.0 -0.6 -0.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.3 -0.3 +0.5 +0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 -0.2 +0.6 +0.3 N.D.
carbon source acetate (C) +0.6 +0.3 -0.3 +0.1 N.D.
carbon source butyrate (C) +0.9 +0.2 -0.6 +0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +1.6 +0.3 +0.1 -0.0 N.D.
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