Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02729 and H281DRAFT_02730 are separated by 71 nucleotidesH281DRAFT_02730 and H281DRAFT_02731 overlap by 4 nucleotidesH281DRAFT_02731 and H281DRAFT_02732 overlap by 4 nucleotidesH281DRAFT_02732 and H281DRAFT_02733 are separated by 129 nucleotides H281DRAFT_02729: H281DRAFT_02729 - Uncharacterized conserved protein, DUF1800 family, at 315,380 to 316,915 _02729 H281DRAFT_02730: H281DRAFT_02730 - Uncharacterized membrane protein, at 316,987 to 317,496 _02730 H281DRAFT_02731: H281DRAFT_02731 - hypothetical protein, at 317,493 to 317,912 _02731 H281DRAFT_02732: H281DRAFT_02732 - RNA polymerase sigma-70 factor, ECF subfamily, at 317,909 to 318,469 _02732 H281DRAFT_02733: H281DRAFT_02733 - hypothetical protein, at 318,599 to 318,700 _02733
Group Condition H281DRAFT_02729 H281DRAFT_02730 H281DRAFT_02731 H281DRAFT_02732 H281DRAFT_02733
phage Bu1_10 N.D. N.D. -0.7 -3.5 N.D.
carbon source Sebacic (C) N.D. N.D. -2.8 -0.4 N.D.
carbon source Valeric (C) N.D. N.D. -0.7 -1.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 -0.2 N.D.
carbon source Pimelic (C) N.D. N.D. -1.1 -1.2 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -1.1 -1.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -1.6 -0.6 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -1.1 -1.1 N.D.
carbon source Hexanoic (C) N.D. N.D. -0.8 -1.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. +0.3 -2.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.4 -0.4 N.D.
carbon source Hexanoic (C) N.D. N.D. -0.1 -1.7 N.D.
carbon source D-Glucose 20 mM (C) N.D. N.D. -0.4 -1.4 N.D.
lb LB N.D. N.D. -0.8 -0.9 N.D.
carbon source Suberic (C) N.D. N.D. -1.0 -0.7 N.D.
carbon source D,L-Lactate (C) N.D. N.D. -1.3 -0.3 N.D.
carbon source D-Glucose (C) N.D. N.D. -0.9 -0.7 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. -1.1 -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.1 -1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.1 +0.7 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. +0.4 -1.7 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. +0.2 -1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.4 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.3 +0.2 N.D.
carbon source Azelaic (C) N.D. N.D. -1.3 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.4 +0.3 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.2 +0.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. +0.7 -1.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. +0.5 -1.1 N.D.
phage Bu1_100 N.D. N.D. +0.8 +1.4 N.D.
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