Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02619 and H281DRAFT_02620 are separated by 23 nucleotidesH281DRAFT_02620 and H281DRAFT_02621 are separated by 107 nucleotidesH281DRAFT_02621 and H281DRAFT_02622 overlap by 4 nucleotidesH281DRAFT_02622 and H281DRAFT_02623 overlap by 20 nucleotides H281DRAFT_02619: H281DRAFT_02619 - N-acyl-D-amino-acid deacylase, at 194,966 to 196,402 _02619 H281DRAFT_02620: H281DRAFT_02620 - Sugar phosphate permease, at 196,426 to 197,742 _02620 H281DRAFT_02621: H281DRAFT_02621 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 197,850 to 199,193 _02621 H281DRAFT_02622: H281DRAFT_02622 - hypothetical protein, at 199,190 to 199,357 _02622 H281DRAFT_02623: H281DRAFT_02623 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 199,338 to 200,678 _02623
Group Condition H281DRAFT_02619 H281DRAFT_02620 H281DRAFT_02621 H281DRAFT_02622 H281DRAFT_02623
carbon source butyrate (C) -0.8 -1.1 -0.3 N.D. -0.0
carbon source Azelaic (C) -0.5 -0.8 +0.1 N.D. -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -0.9 -0.7 N.D. +0.2
carbon source D-Glucose (C) -0.5 -0.6 +0.2 N.D. -0.5
carbon source 2-Deoxy-D-Ribose (C) -0.4 -0.2 +0.1 N.D. -0.8
phage Bu1_100 -0.6 +0.0 -0.9 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.3 -0.1 N.D. -1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.7 -0.4 N.D. +0.2
carbon source Sebacic (C) -0.1 -0.9 -0.3 N.D. +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 -0.3 +0.3 N.D. -0.6
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 -0.1 +0.4 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.5 -0.2 N.D. -0.7
carbon source acetate (C) +0.5 -0.2 +0.2 N.D. -1.0
carbon source Glycerol (C) -0.4 -0.5 +0.1 N.D. +0.4
carbon source 2'-Deoxyinosine 10 mM (C) -0.8 -0.1 +0.4 N.D. +0.1
carbon source 2-Deoxy-D-Ribose (C) -0.7 +0.2 +0.3 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 -0.6 N.D. -0.4
carbon source adipate (C) -0.1 -0.1 -0.6 N.D. +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.3 +0.5 +0.0 N.D. +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 -0.7 +0.4 N.D. +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 -0.4 +0.5 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 +0.1 +0.5 N.D. +0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.5 -0.3 -0.2 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 +0.4 +0.2 N.D. +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.7 +0.4 -0.2 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 +0.3 +0.3 N.D. +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.7 +0.4 +0.2 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.8 +0.3 -0.2 N.D. +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.6 +0.3 +0.3 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.9 +0.1 +0.2 N.D. +0.3
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