Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02603 and H281DRAFT_02604 are separated by 707 nucleotidesH281DRAFT_02604 and H281DRAFT_02605 are separated by 585 nucleotidesH281DRAFT_02605 and H281DRAFT_02606 are separated by 317 nucleotidesH281DRAFT_02606 and H281DRAFT_02607 are separated by 862 nucleotides H281DRAFT_02603: H281DRAFT_02603 - Outer membrane protein (porin), at 178,649 to 179,776 _02603 H281DRAFT_02604: H281DRAFT_02604 - hypothetical protein, at 180,484 to 180,786 _02604 H281DRAFT_02605: H281DRAFT_02605 - Glycosyltransferase involved in cell wall bisynthesis, at 181,372 to 182,343 _02605 H281DRAFT_02606: H281DRAFT_02606 - 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase, at 182,661 to 183,326 _02606 H281DRAFT_02607: H281DRAFT_02607 - protein of unknown function (DUF4148), at 184,189 to 184,497 _02607
Group Condition H281DRAFT_02603 H281DRAFT_02604 H281DRAFT_02605 H281DRAFT_02606 H281DRAFT_02607
carbon source D-Glucose (C) -0.2 N.D. -0.7 N.D. N.D.
carbon source propionate (C) -0.3 N.D. -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -0.8 N.D. N.D.
carbon source Valeric (C) +0.6 N.D. -1.3 N.D. N.D.
carbon source D-Glucose (C) -0.1 N.D. -0.6 N.D. N.D.
carbon source butyrate (C) +0.3 N.D. -0.7 N.D. N.D.
carbon source adipate (C) +0.6 N.D. -0.9 N.D. N.D.
phage Bu1_10 -0.7 N.D. +0.4 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 N.D. -0.6 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 N.D. -0.5 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 N.D. -0.4 N.D. N.D.
carbon source succinate (C) +0.5 N.D. -0.4 N.D. N.D.
carbon source Gallic Acid (C) -0.3 N.D. +0.4 N.D. N.D.
carbon source butyrate (C) +0.5 N.D. -0.4 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.3 N.D. +0.4 N.D. N.D.
carbon source 3-Hydroxypropionate (C) -0.3 N.D. +0.4 N.D. N.D.
carbon source Hexanoic (C) +0.5 N.D. -0.4 N.D. N.D.
carbon source D-Glucose (C) +0.5 N.D. -0.3 N.D. N.D.
carbon source Suberic (C) +0.5 N.D. -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. +0.6 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.3 N.D. +0.8 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.2 N.D. +0.5 N.D. N.D.
carbon source Hexanoic (C) +0.6 N.D. +0.1 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.2 N.D. +0.6 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 N.D. +0.6 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 N.D. +0.8 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.4 N.D. +0.6 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.2 N.D. +0.8 N.D. N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 N.D. +1.0 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 N.D. +0.9 N.D. N.D.
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