Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02576 and H281DRAFT_02577 are separated by 30 nucleotidesH281DRAFT_02577 and H281DRAFT_02578 are separated by 45 nucleotidesH281DRAFT_02578 and H281DRAFT_02579 are separated by 10 nucleotidesH281DRAFT_02579 and H281DRAFT_02580 overlap by 1 nucleotides H281DRAFT_02576: H281DRAFT_02576 - transcriptional regulator, IclR family, at 151,297 to 152,088 _02576 H281DRAFT_02577: H281DRAFT_02577 - Sugar phosphate isomerase/epimerase, at 152,119 to 152,934 _02577 H281DRAFT_02578: H281DRAFT_02578 - hydroxyquinol 1,2-dioxygenase, at 152,980 to 153,846 _02578 H281DRAFT_02579: H281DRAFT_02579 - maleylacetate reductase, at 153,857 to 154,942 _02579 H281DRAFT_02580: H281DRAFT_02580 - SnoaL-like domain-containing protein, at 154,942 to 155,541 _02580
Group Condition H281DRAFT_02576 H281DRAFT_02577 H281DRAFT_02578 H281DRAFT_02579 H281DRAFT_02580
carbon source Hexanoic (C) -1.6 -0.6 N.D. -0.8 -1.4
carbon source Valeric (C) -1.4 -0.0 N.D. -0.8 -0.7
carbon source propionate (C) -0.9 -0.4 N.D. -0.5 -1.0
carbon source butyrate (C) -0.8 -0.6 N.D. -0.1 -0.7
carbon source Protocatechuic Acid (C) -0.2 +0.0 N.D. -0.2 -1.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.6 -0.1 N.D. -0.8 -0.4
carbon source Valeric (C) -0.8 -0.5 N.D. -0.5 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.2 N.D. -0.2 -1.9
carbon source Hexanoic (C) -1.8 -0.2 N.D. +0.1 +0.3
carbon source Azelaic (C) +0.1 -0.2 N.D. -1.2 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.5 +0.2 N.D. -1.2 +0.4
carbon source Gallic Acid (C) +0.2 +0.1 N.D. -0.7 -0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 -0.4 N.D. +0.3 -0.6
carbon source adipate (C) -0.9 -0.2 N.D. +0.4 -0.3
carbon source butyrate (C) -1.4 +0.1 N.D. +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -0.3 N.D. -0.1 +0.4
carbon source propionate (C) -0.8 +0.2 N.D. +0.4 -0.7
carbon source 2-Deoxy-D-Ribose (C) -0.7 +0.1 N.D. +0.6 -0.5
carbon source p-Coumaric (C) -0.5 +0.4 N.D. +0.5 -0.5
carbon source 2-Deoxy-D-Ribose (C) -0.2 +0.4 N.D. +0.5 -0.7
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.8 +0.1 N.D. +0.8 +0.0
carbon source D,L-Lactate (C) -0.3 -0.4 N.D. +0.4 +0.9
carbon source D-Glucose (C) -0.2 +0.3 N.D. -0.1 +1.1
carbon source propionate (C) -0.8 +1.0 N.D. +0.8 +0.0
carbon source Protocatechuic Acid (C) +0.5 +0.5 N.D. +0.5 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 +0.4 N.D. -0.7 +0.9
lb LB +0.2 +0.4 N.D. -0.1 +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.6 N.D. +0.7 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.9 +0.3 N.D. +0.4 +0.6
phage Bu1_100 +0.6 +1.0 N.D. -0.1 +1.1
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