Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02556 and H281DRAFT_02557 are separated by 74 nucleotidesH281DRAFT_02557 and H281DRAFT_02558 are separated by 336 nucleotidesH281DRAFT_02558 and H281DRAFT_02559 overlap by 8 nucleotidesH281DRAFT_02559 and H281DRAFT_02560 are separated by 165 nucleotides H281DRAFT_02556: H281DRAFT_02556 - Outer membrane protein (porin), at 129,128 to 130,351 _02556 H281DRAFT_02557: H281DRAFT_02557 - Beta-barrel assembly machine subunit BamA, at 130,426 to 132,735 _02557 H281DRAFT_02558: H281DRAFT_02558 - hypothetical protein, at 133,072 to 133,248 _02558 H281DRAFT_02559: H281DRAFT_02559 - hypothetical protein, at 133,241 to 133,630 _02559 H281DRAFT_02560: H281DRAFT_02560 - LPS-assembly protein, at 133,796 to 136,081 _02560
Group Condition H281DRAFT_02556 H281DRAFT_02557 H281DRAFT_02558 H281DRAFT_02559 H281DRAFT_02560
carbon source Hexanoic (C) +0.3 -0.2 N.D. -1.6 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -0.1 N.D. -0.3 -0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.5 +0.1 N.D. -0.7 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.5 -0.2 N.D. +0.4 -0.1
phage Bu1_10 +0.4 -0.1 N.D. -1.5 -0.1
carbon source Azelaic (C) -1.1 +0.0 N.D. +0.6 +0.3
carbon source adipate (C) -0.5 +0.3 N.D. -0.3 +0.6
carbon source 2-Deoxy-D-Ribose (C) -0.6 +0.1 N.D. +0.6 +0.0
carbon source D-Glucose (C) -0.3 +0.2 N.D. -0.3 +0.6
carbon source Glycerol (C) +0.4 +0.1 N.D. -0.7 +0.4
carbon source butyrate (C) -0.5 +0.2 N.D. +0.5 +0.2
carbon source Hydroxy-L-Proline (C) +0.8 +0.0 N.D. +0.3 -0.5
ecofab LB in EcoFAB_3.5mL -0.4 +0.3 N.D. +0.6 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.0 N.D. +1.2 -0.4
carbon source Sebacic (C) +0.6 +0.2 N.D. -0.4 +0.3
carbon source Hexanoic (C) +0.7 +0.2 N.D. +0.2 -0.3
carbon source Dodecandioic (C) -0.3 +0.3 N.D. +0.4 +0.4
carbon source 3-Hydroxypropionate (C) +0.7 -0.2 N.D. +0.2 +0.2
carbon source butyrate (C) +0.1 -0.2 N.D. +0.5 +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.4 +0.1 N.D. +0.7 -0.2
carbon source Valeric (C) +0.8 +0.3 N.D. -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.0 N.D. +0.6 -0.1
carbon source propionate (C) +0.6 +0.4 N.D. -0.1 +0.3
carbon source Malonic (C) +0.6 +0.1 N.D. +0.3 +0.4
carbon source adipate (C) +0.3 -0.0 N.D. +0.4 +0.7
carbon source succinate (C) +0.3 +0.1 N.D. +0.3 +0.7
carbon source propionate (C) +0.8 +0.2 N.D. +0.0 +0.4
carbon source succinate (C) +0.5 +0.2 N.D. +0.4 +0.4
carbon source Valeric (C) +0.7 +0.4 N.D. -0.1 +0.5
carbon source acetate (C) +0.9 +0.2 N.D. +0.6 +0.7
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