Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	H281DRAFT_02514	H281DRAFT_02515	H281DRAFT_02516	H281DRAFT_02517	H281DRAFT_02518
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM	-0.5	N.D.	-0.2	-0.5	-1.0
phage	Bu1_10	-0.3	N.D.	-0.1	-0.0	-0.8
carbon source	2-furoic (C)	-0.3	N.D.	+0.1	+0.0	-0.7
carbon source	D-Glucose 20 mM (C)	-0.5	N.D.	+0.2	+0.1	-0.5
carbon source	2'-Deoxyinosine 10 mM (C)	+0.0	N.D.	-0.0	+0.1	-0.8
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.3	N.D.	+0.2	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	-0.4	-0.1	-0.4
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.4	N.D.	-0.3	-0.1	+0.3
carbon source	D,L-Lactate (C)	+0.3	N.D.	-0.2	-0.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	-0.2	-0.1	-0.5
carbon source	Valeric (C)	+0.3	N.D.	-0.2	+0.0	-0.6
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.5	N.D.	+0.2	+0.2	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 2.5 mM (C)	-0.2	N.D.	+0.2	+0.1	-0.4
carbon source	adipate (C)	+0.4	N.D.	-0.2	+0.0	-0.4
carbon source	succinate (C)	-0.4	N.D.	-0.2	-0.0	+0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.2	N.D.	+0.1	-0.1	-0.5
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.6	N.D.	+0.3	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	-0.3	-0.0	-0.3
carbon source	D-Glucose (C)	-0.5	N.D.	-0.2	+0.1	+0.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.2	N.D.	+0.2	+0.3	-0.3
carbon source	D-Galactose (C)	-0.3	N.D.	-0.1	-0.0	+0.5
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.1	N.D.	-0.3	-0.2	+0.5
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.4	N.D.	+0.1	+0.0	-0.5
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM	+0.6	N.D.	-0.2	+0.1	+0.2
carbon source	acetate (C)	+0.5	N.D.	-0.1	+0.1	+0.3
carbon source	Protocatechuic Acid (C)	+0.5	N.D.	+0.1	+0.2	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.6	N.D.	+0.2	-0.0	+0.5
phage	Bu1_100	+0.7	N.D.	+0.1	+0.2	+0.2
carbon source	acetate (C)	+0.8	N.D.	+0.2	+0.0	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.5	N.D.	+0.2	+0.1	+0.6