Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02501 and H281DRAFT_02502 are separated by 244 nucleotidesH281DRAFT_02502 and H281DRAFT_02503 overlap by 24 nucleotidesH281DRAFT_02503 and H281DRAFT_02504 are separated by 143 nucleotidesH281DRAFT_02504 and H281DRAFT_02505 are separated by 222 nucleotides H281DRAFT_02501: H281DRAFT_02501 - hypothetical protein, at 78,337 to 79,449 _02501 H281DRAFT_02502: H281DRAFT_02502 - transcriptional regulator, LysR family, at 79,694 to 80,626 _02502 H281DRAFT_02503: H281DRAFT_02503 - Peroxiredoxin, at 80,603 to 81,325 _02503 H281DRAFT_02504: H281DRAFT_02504 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 81,469 to 82,029 _02504 H281DRAFT_02505: H281DRAFT_02505 - hypothetical protein, at 82,252 to 82,653 _02505
Group Condition H281DRAFT_02501 H281DRAFT_02502 H281DRAFT_02503 H281DRAFT_02504 H281DRAFT_02505
carbon source Malonic (C) -0.2 -1.0 -0.3 -0.5 -1.0
carbon source succinate (C) -0.6 -0.1 -0.4 -0.3 -0.8
phage Bu1_100 -1.1 +0.2 -0.4 -0.7 -0.1
carbon source Azelaic (C) -0.1 +0.3 +0.1 -0.9 -1.2
carbon source Valeric (C) -0.1 +0.1 +0.1 +0.1 -1.3
carbon source butyrate (C) -0.1 -0.2 -0.5 -0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.4 +0.6 -0.5 -0.3
carbon source adipate (C) +0.4 +0.2 -0.9 -0.2 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 +0.4 +0.1 -0.4 -0.7
carbon source butyrate (C) -0.2 +0.2 -0.3 -0.5 +0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 +0.0 +0.2 -0.5 -0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 +0.1 +0.5 -0.4 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.5 +0.6 -0.4 -0.5
carbon source propionate (C) +0.2 -0.1 -0.2 +0.7 -0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 -0.2 +0.9 -0.3 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.0 +0.1 +0.7 -0.2 -0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 -0.2 +1.0 -0.3 -0.2
carbon source D-Glucose (C) +0.1 -0.7 -0.1 +0.3 +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 +0.3 +0.8 -0.1 -0.8
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.3 +0.6 -0.6 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 +0.0 +1.1 -0.2 -0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 -0.2 +1.2 -0.5 -0.1
phage Bu1_100 +0.5 -0.0 +0.1 +0.7 -0.7
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.3 +0.5 +0.4 -0.4
carbon source D-Glucose 20 mM (C) +0.0 +0.2 +1.0 +0.1 -0.7
ecofab LB in EcoFAB_3.5mL +0.1 -0.0 +1.1 -0.5 -0.1
carbon source 3-Hydroxypropionate (C) -0.4 +0.2 +0.4 +0.1 +0.7
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +0.1 +0.8 +0.4 -0.5
carbon source Hexanoic (C) -0.1 +0.5 +0.6 +0.6 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 -0.3 -0.2 +1.4 +0.3
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