Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02464 and H281DRAFT_02465 are separated by 45 nucleotidesH281DRAFT_02465 and H281DRAFT_02466 are separated by 238 nucleotidesH281DRAFT_02466 and H281DRAFT_02467 are separated by 96 nucleotidesH281DRAFT_02467 and H281DRAFT_02468 are separated by 531 nucleotides H281DRAFT_02464: H281DRAFT_02464 - betaine aldehyde dehydrogenase, at 32,179 to 33,648 _02464 H281DRAFT_02465: H281DRAFT_02465 - transcriptional regulator, TetR family, at 33,694 to 34,287 _02465 H281DRAFT_02466: H281DRAFT_02466 - glutathione-independent formaldehyde dehydrogenase, at 34,526 to 35,725 _02466 H281DRAFT_02467: H281DRAFT_02467 - transcriptional regulator, AraC family with amidase-like domain, at 35,822 to 36,817 _02467 H281DRAFT_02468: H281DRAFT_02468 - serine hydroxymethyltransferase, at 37,349 to 38,623 _02468
Group Condition H281DRAFT_02464 H281DRAFT_02465 H281DRAFT_02466 H281DRAFT_02467 H281DRAFT_02468
carbon source Hexanoic (C) -0.3 -1.0 -0.4 -0.9 -0.3
carbon source adipate (C) -0.3 -0.2 -0.4 -0.2 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 -0.3 -0.1 -0.6 -0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.3 -0.1 +0.2 -1.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.6 -0.3 +0.2 -0.8 -0.2
carbon source Sebacic (C) +0.3 -0.1 -0.4 -0.9 -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 -0.6 +0.4 -0.3 -0.7
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.1 -0.2 -0.1 -1.1
carbon source Valeric (C) -0.6 -0.6 -0.2 +0.3 -0.2
carbon source Azelaic (C) -0.6 -0.5 -0.2 +0.6 -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.1 -0.2 -0.8 +0.1
phage Bu1_10 -0.6 -1.2 +0.3 +0.2 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 -0.4 +0.2 -0.9 +0.0
carbon source D-Glucose (C) -0.4 -0.2 -0.3 +0.3 -0.2
carbon source Valeric (C) +0.5 -0.9 -0.1 -0.1 -0.3
phage Bu1_100 -0.6 -0.4 -0.3 -0.1 +0.7
carbon source propionate (C) +0.2 -0.6 -0.2 +0.2 -0.3
carbon source Hexanoic (C) -0.1 -1.0 -0.4 +0.7 +0.0
carbon source acetate (C) -0.2 -0.6 -0.2 +0.5 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 -0.4 +0.0 +0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.2 +0.0 +0.2 -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 -0.3 +0.1 +0.2 -0.4
carbon source Gallic Acid (C) -0.3 -0.2 -0.4 +0.4 +0.1
carbon source butyrate (C) -0.4 -0.2 -0.1 +0.3 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 -0.4 +0.2 -0.3 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 -0.3 +0.3 -0.4 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 +0.3 +0.3 -0.4 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 -0.6 +0.0 +0.7 +0.2
carbon source D-Glucose (C) +0.4 -0.2 +0.2 +0.3 -0.2
carbon source 2-Deoxy-D-Ribose (C) -0.3 +0.5 +0.4 +0.3 +0.1
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