Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02445 and H281DRAFT_02446 are separated by 210 nucleotidesH281DRAFT_02446 and H281DRAFT_02447 are separated by 391 nucleotidesH281DRAFT_02447 and H281DRAFT_02448 are separated by 185 nucleotidesH281DRAFT_02448 and H281DRAFT_02449 are separated by 328 nucleotides H281DRAFT_02445: H281DRAFT_02445 - cytochrome c peroxidase, at 8,225 to 9,676 _02445 H281DRAFT_02446: H281DRAFT_02446 - phospholipase C, at 9,887 to 11,665 _02446 H281DRAFT_02447: H281DRAFT_02447 - Short-chain dehydrogenase, at 12,057 to 13,073 _02447 H281DRAFT_02448: H281DRAFT_02448 - Predicted periplasmic or secreted lipoprotein, at 13,259 to 13,627 _02448 H281DRAFT_02449: H281DRAFT_02449 - hypothetical protein, at 13,956 to 14,273 _02449
Group Condition H281DRAFT_02445 H281DRAFT_02446 H281DRAFT_02447 H281DRAFT_02448 H281DRAFT_02449
phage Bu1_10 +0.1 -0.2 +0.0 N.D. -1.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 -0.5 -0.0 N.D. -1.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 -0.2 -0.2 N.D. -0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 -0.3 -0.2 N.D. -1.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.3 -0.1 N.D. -0.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 -0.4 +0.2 N.D. -0.9
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.4 +0.2 N.D. -0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.5 -0.3 +0.1 N.D. -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.4 -0.1 +0.1 N.D. -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -0.4 +0.1 N.D. -0.7
carbon source Sebacic (C) +0.4 -0.1 +0.0 N.D. -1.1
carbon source Hexanoic (C) +0.2 -0.3 -0.3 N.D. -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.3 -0.1 N.D. -0.5
phage Bu1_100 -0.5 +0.3 -0.4 N.D. -0.2
carbon source Gallic Acid (C) +0.2 -0.3 -0.2 N.D. -0.4
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.4 -0.3 +0.1 N.D. -0.6
carbon source Hexanoic (C) +0.4 +0.0 -0.4 N.D. -0.3
carbon source Pimelic (C) -0.3 -0.2 -0.2 N.D. +0.4
carbon source acetate (C) +0.4 +0.0 -0.0 N.D. -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.6 -0.4 +0.3 N.D. +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 -0.4 -0.0 N.D. +0.5
carbon source Malonic (C) +0.4 -0.3 -0.2 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 +0.1 -0.1 N.D. -0.4
carbon source Valeric (C) -0.4 -0.1 +0.2 N.D. +0.6
carbon source D-Glucose (C) -0.1 -0.1 -0.2 N.D. +0.7
carbon source Valeric (C) -0.1 -0.4 +0.1 N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.2 +0.1 N.D. -0.3
lb LB -0.0 -0.2 +0.1 N.D. +0.8
carbon source succinate (C) +0.5 -0.2 +0.0 N.D. +0.3
carbon source butyrate (C) +0.0 -0.1 -0.1 N.D. +1.0
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