Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02400 and H281DRAFT_02401 are separated by 217 nucleotidesH281DRAFT_02401 and H281DRAFT_02402 are separated by 476 nucleotidesH281DRAFT_02402 and H281DRAFT_02403 are separated by 386 nucleotidesH281DRAFT_02403 and H281DRAFT_02404 are separated by 303 nucleotides H281DRAFT_02400: H281DRAFT_02400 - cyclohexadienyl dehydratase (EC 4.2.1.91), at 565,099 to 565,896 _02400 H281DRAFT_02401: H281DRAFT_02401 - uroporphyrinogen decarboxylase, at 566,114 to 567,214 _02401 H281DRAFT_02402: H281DRAFT_02402 - replication restart DNA helicase PriA, at 567,691 to 569,937 _02402 H281DRAFT_02403: H281DRAFT_02403 - hypothetical protein, at 570,324 to 570,494 _02403 H281DRAFT_02404: H281DRAFT_02404 - L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase, at 570,798 to 574,736 _02404
Group Condition H281DRAFT_02400 H281DRAFT_02401 H281DRAFT_02402 H281DRAFT_02403 H281DRAFT_02404
phage Bu1_100 -1.2 N.D. N.D. -0.5 -1.5
phage Bu1_10 -0.9 N.D. N.D. -0.1 -1.6
carbon source Hexanoic (C) -0.8 N.D. N.D. -0.9 -0.1
phage Bu1_100 -0.6 N.D. N.D. +0.5 -1.6
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. N.D. -0.2 -0.7
carbon source Hexanoic (C) -0.3 N.D. N.D. -0.5 -0.3
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 N.D. N.D. +0.1 -0.6
carbon source Azelaic (C) -0.2 N.D. N.D. -0.8 +0.2
carbon source adipate (C) -0.1 N.D. N.D. -0.9 +0.3
carbon source propionate (C) -0.1 N.D. N.D. -0.4 -0.1
carbon source Malonic (C) -0.1 N.D. N.D. -0.5 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 N.D. N.D. +0.4 -0.4
carbon source 2-furoic (C) -0.3 N.D. N.D. -0.4 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.3 N.D. N.D. +0.2 -0.3
carbon source Malonic (C) +0.2 N.D. N.D. -0.5 +0.0
carbon source adipate (C) -0.3 N.D. N.D. -0.2 +0.2
carbon source 2'-Deoxyinosine 10 mM (C) -0.0 N.D. N.D. +0.6 -0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 N.D. N.D. +0.5 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 N.D. N.D. +0.2 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 N.D. N.D. -0.3 +0.7
carbon source D-Galactose (C) +0.3 N.D. N.D. +0.4 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 N.D. N.D. +0.0 +0.7
carbon source Gallic Acid (C) +0.1 N.D. N.D. +0.1 +0.6
carbon source L-Glutamic (C) -0.3 N.D. N.D. -0.1 +1.3
carbon source L-Glutamic (C) -0.1 N.D. N.D. -0.0 +1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. N.D. -0.0 +1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 N.D. N.D. +0.1 +1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 N.D. N.D. +0.0 +0.9
carbon source Hydroxy-L-Proline (C) -0.0 N.D. N.D. -0.6 +2.2
carbon source Hydroxy-L-Proline (C) -0.0 N.D. N.D. -0.1 +3.9
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