Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02358 and H281DRAFT_02359 are separated by 139 nucleotidesH281DRAFT_02359 and H281DRAFT_02360 are separated by 413 nucleotidesH281DRAFT_02360 and H281DRAFT_02361 are separated by 865 nucleotidesH281DRAFT_02361 and H281DRAFT_02362 are separated by 98 nucleotides H281DRAFT_02358: H281DRAFT_02358 - GTPase, G3E family, at 517,084 to 518,400 _02358 H281DRAFT_02359: H281DRAFT_02359 - HU family DNA-binding protein, at 518,540 to 518,818 _02359 H281DRAFT_02360: H281DRAFT_02360 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein, at 519,232 to 521,211 _02360 H281DRAFT_02361: H281DRAFT_02361 - transporter, CPA2 family, at 522,077 to 523,282 _02361 H281DRAFT_02362: H281DRAFT_02362 - carboxylate-amine ligase, at 523,381 to 524,496 _02362
Group Condition H281DRAFT_02358 H281DRAFT_02359 H281DRAFT_02360 H281DRAFT_02361 H281DRAFT_02362
carbon source succinate (C) -0.2 N.D. +0.0 -2.8 -2.7
carbon source succinate (C) +0.1 N.D. -0.1 -2.6 -2.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.4 N.D. -0.2 -0.9 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.4 N.D. -0.1 -0.8 -0.8
carbon source propionate (C) -0.1 N.D. +0.1 -2.0 -1.7
carbon source propionate (C) -0.0 N.D. -0.0 -1.7 -1.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.6 N.D. -0.1 -0.6 -0.5
carbon source D-Glucose (C) -0.6 N.D. -0.0 -1.1 -1.0
carbon source acetate (C) +0.1 N.D. +0.2 -1.5 -1.4
carbon source Suberic (C) -0.1 N.D. -0.0 -1.2 -1.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.8 N.D. -0.0 -0.2 -0.4
carbon source Dodecandioic (C) -0.1 N.D. +0.2 -1.4 -1.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -2.8 N.D. +0.1 +0.1 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.7 N.D. -0.1 -0.3 -0.2
carbon source acetate (C) -0.2 N.D. +0.1 -0.8 -1.2
carbon source Pimelic (C) -0.2 N.D. +0.1 -1.0 -0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -2.5 N.D. +0.1 +0.3 +0.3
carbon source Malonic (C) +0.2 N.D. -0.1 -0.7 -1.0
lb LB -0.4 N.D. -0.1 -0.7 -0.4
lb LB -0.4 N.D. -0.0 -0.5 -0.5
carbon source Phenylacetic (C) -0.2 N.D. -0.1 -0.6 -0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. +0.0 -0.6 -0.6
carbon source Phenylacetic (C) -0.2 N.D. -0.2 -0.4 -0.7
phage Bu1_10 +0.5 N.D. -0.2 -0.3 -0.7
carbon source butyrate (C) -0.5 N.D. -0.2 +0.4 +0.4
carbon source Sebacic (C) -0.2 N.D. +0.1 +0.5 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 N.D. -0.4 +0.9 +0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 N.D. +0.0 +0.9 +0.8
carbon source Azelaic (C) +0.2 N.D. +0.3 +0.8 +1.0
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. -0.4 +1.9 +1.7
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