Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02273 and H281DRAFT_02274 are separated by 173 nucleotidesH281DRAFT_02274 and H281DRAFT_02275 overlap by 23 nucleotidesH281DRAFT_02275 and H281DRAFT_02276 overlap by 4 nucleotidesH281DRAFT_02276 and H281DRAFT_02277 are separated by 114 nucleotides H281DRAFT_02273: H281DRAFT_02273 - hypothetical protein, at 418,820 to 419,194 _02273 H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882 _02274 H281DRAFT_02275: H281DRAFT_02275 - chromosome partitioning protein, ParB family, at 420,860 to 421,774 _02275 H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670 _02276 H281DRAFT_02277: H281DRAFT_02277 - hypothetical protein, at 422,785 to 423,126 _02277
Group Condition H281DRAFT_02273 H281DRAFT_02274 H281DRAFT_02275 H281DRAFT_02276 H281DRAFT_02277
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 -0.1 +0.0 -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.1 -0.4 -0.3 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.4 -0.0 -0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.0 -0.5 -0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.1 -0.3 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.1 -0.3 -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.1 +0.2 -0.5 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 +0.1 -0.1 +0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.2 -0.1 +0.2 +0.3 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 -0.1 -0.2 +0.4 N.D.
carbon source Protocatechuic Acid (C) +0.3 +0.1 -0.3 +0.2 N.D.
carbon source Valeric (C) -0.2 +0.1 -0.1 +0.5 N.D.
carbon source butyrate (C) +0.5 +0.1 -0.2 -0.0 N.D.
carbon source Valeric (C) +0.5 -0.1 -0.3 +0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 +0.1 +0.2 +0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.2 -0.0 +0.2 +0.5 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 +0.1 -0.1 +0.7 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.4 +0.0 +0.2 +0.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 -0.0 +0.3 +0.6 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +0.1 -0.1 +0.1 N.D.
carbon source adipate (C) +0.3 -0.0 +0.3 +0.3 N.D.
carbon source adipate (C) +0.1 -0.1 +0.1 +0.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.7 +0.2 +0.1 -0.0 N.D.
carbon source butyrate (C) +0.7 -0.0 +0.0 +0.3 N.D.
carbon source succinate (C) +0.4 +0.2 +0.0 +0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.3 +0.1 +0.2 +0.5 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 +0.1 +0.2 +1.0 N.D.
carbon source Azelaic (C) +0.6 +0.1 +0.0 +0.4 N.D.
carbon source Protocatechuic Acid (C) +0.6 -0.1 -0.0 +0.7 N.D.
carbon source Hexanoic (C) +0.4 +0.2 +0.2 +0.6 N.D.
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