Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02229 and H281DRAFT_02230 are separated by 203 nucleotidesH281DRAFT_02230 and H281DRAFT_02231 are separated by 6 nucleotidesH281DRAFT_02231 and H281DRAFT_02232 are separated by 72 nucleotidesH281DRAFT_02232 and H281DRAFT_02233 are separated by 380 nucleotides H281DRAFT_02229: H281DRAFT_02229 - 2-dehydro-3-deoxyglucarate aldolase, at 374,481 to 375,263 _02229 H281DRAFT_02230: H281DRAFT_02230 - 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 375,467 to 375,913 _02230 H281DRAFT_02231: H281DRAFT_02231 - 7-carboxy-7-deazaguanine synthase, Cx14CxxC type, at 375,920 to 376,552 _02231 H281DRAFT_02232: H281DRAFT_02232 - preQ(0) biosynthesis protein QueC, at 376,625 to 377,356 _02232 H281DRAFT_02233: H281DRAFT_02233 - tRNA_Phe_GAA, at 377,737 to 377,812 _02233
Group Condition H281DRAFT_02229 H281DRAFT_02230 H281DRAFT_02231 H281DRAFT_02232 H281DRAFT_02233
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -5.8 -4.3 -3.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -5.7 -3.7 -4.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -5.4 -3.9 -4.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -5.4 -3.9 -4.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -5.7 -3.7 -3.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -5.0 -3.6 -4.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -4.8 -3.7 -3.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -4.4 -3.4 -3.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.4 -4.0 -4.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.8 -2.9 -4.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.2 -4.2 -3.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -4.6 -2.7 -3.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.2 -3.2 -3.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -3.6 -2.3 -2.8 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -2.0 -4.5 -1.0 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.5 -2.3 -2.1 N.D.
carbon source Protocatechuic Acid (C) N.D. -0.4 -5.5 -0.9 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -2.0 -2.1 -1.2 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.2 -1.5 -1.6 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -1.2 -2.5 -0.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.0 -2.4 -0.4 N.D.
carbon source D-Glucose (C) N.D. -1.4 -0.9 -1.0 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.4 -0.2 -1.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.3 -0.9 -0.8 N.D.
carbon source Gallic Acid (C) N.D. -0.9 -1.1 -0.9 N.D.
carbon source D-Glucose (C) N.D. -0.9 -0.9 -1.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.5 -1.8 -0.2 N.D.
carbon source acetate (C) N.D. -0.1 -2.5 +0.3 N.D.
control NoPhageControl N.D. -1.8 +0.7 -0.7 N.D.
carbon source Hexanoic (C) N.D. +0.6 +1.7 +0.8 N.D.
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