Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_02224 and H281DRAFT_02225 overlap by 4 nucleotidesH281DRAFT_02225 and H281DRAFT_02226 are separated by 141 nucleotidesH281DRAFT_02226 and H281DRAFT_02227 are separated by 10 nucleotidesH281DRAFT_02227 and H281DRAFT_02228 are separated by 142 nucleotides H281DRAFT_02224: H281DRAFT_02224 - rod shape-determining protein MreC, at 368,307 to 369,413 _02224 H281DRAFT_02225: H281DRAFT_02225 - rod shape-determining protein MreD, at 369,410 to 369,922 _02225 H281DRAFT_02226: H281DRAFT_02226 - penicillin-binding protein 2, at 370,064 to 372,481 _02226 H281DRAFT_02227: H281DRAFT_02227 - cell elongation-specific peptidoglycan biosynthesis regulator RodA, at 372,492 to 373,640 _02227 H281DRAFT_02228: H281DRAFT_02228 - Sel1 repeat-containing protein, at 373,783 to 374,484 _02228
Group Condition H281DRAFT_02224 H281DRAFT_02225 H281DRAFT_02226 H281DRAFT_02227 H281DRAFT_02228
phage Bu1_100 -3.5 N.D. N.D. N.D. -0.1
phage Bu1_100 -2.3 N.D. N.D. N.D. +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.0 N.D. N.D. N.D. +0.3
carbon source acetate (C) -1.7 N.D. N.D. N.D. +0.1
phage Bu1_10 -1.1 N.D. N.D. N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.8 N.D. N.D. N.D. -0.1
carbon source Valeric (C) -0.9 N.D. N.D. N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.9 N.D. N.D. N.D. +0.1
ecofab LB in EcoFAB_3.5mL -0.8 N.D. N.D. N.D. +0.0
carbon source Suberic (C) -0.9 N.D. N.D. N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.8 N.D. N.D. N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.8 N.D. N.D. N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.5 N.D. N.D. N.D. +0.3
carbon source Azelaic (C) +0.7 N.D. N.D. N.D. -0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.7 N.D. N.D. N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.8 N.D. N.D. N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.8 N.D. N.D. N.D. -0.0
carbon source D-Glucose 20 mM (C) +0.8 N.D. N.D. N.D. -0.0
carbon source Phenylacetic (C) +0.9 N.D. N.D. N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.0 N.D. N.D. N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +1.1 N.D. N.D. N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.0 N.D. N.D. N.D. -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +1.0 N.D. N.D. N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 N.D. N.D. N.D. +0.1
carbon source 2'-Deoxyinosine 5 mM (C) +1.1 N.D. N.D. N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. N.D. N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) +1.1 N.D. N.D. N.D. +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) +1.3 N.D. N.D. N.D. +0.0
carbon source Phenylacetic (C) +1.3 N.D. N.D. N.D. +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +1.7 N.D. N.D. N.D. -0.0
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