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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia bryophila 376MFSha3.1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
H281DRAFT_02110 and H281DRAFT_02111 are separated by 123 nucleotides
H281DRAFT_02111 and H281DRAFT_02112 are separated by 207 nucleotides
H281DRAFT_02112 and H281DRAFT_02113 are separated by 579 nucleotides
H281DRAFT_02113 and H281DRAFT_02114 are separated by 569 nucleotides
H281DRAFT_02110: H281DRAFT_02110 - methylmalonyl-CoA mutase, at 235,224 to 238,622
_02110
H281DRAFT_02111: H281DRAFT_02111 - transcriptional regulator, LysR family, at 238,746 to 239,681
_02111
H281DRAFT_02112: H281DRAFT_02112 - Outer membrane protein (porin), at 239,889 to 240,974
_02112
H281DRAFT_02113: H281DRAFT_02113 - hypothetical protein, at 241,554 to 242,009
_02113
H281DRAFT_02114: H281DRAFT_02114 - solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 242,579 to 243,604
_02114
Group
Condition
H281DRAFT
_02110
H281DRAFT
_02111
H281DRAFT
_02112
H281DRAFT
_02113
H281DRAFT
_02114
phage
Bu1_10
-0.2
-0.2
+0.0
-0.1
-1.6
phage
Bu1_100
-0.3
-0.5
-0.0
-0.1
-1.2
carbon source
2'-Deoxyinosine 5 mM (C)
-0.1
-0.2
-0.6
-0.1
-0.7
carbon source
Suberic (C)
-0.1
-0.4
-0.0
-0.3
-0.7
carbon source
propionate (C)
+0.0
-0.5
-0.0
-0.1
-0.9
carbon source
D-Glucose (C)
-0.1
-0.6
-0.2
-0.1
-0.6
carbon source
Malonic (C)
+0.1
-0.5
-0.0
-0.1
-0.5
carbon source
Pimelic (C)
-0.1
-0.0
-0.1
-0.2
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.4
+0.0
-0.1
-1.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.1
-0.0
+0.1
-0.8
carbon source
Valeric (C)
+0.0
-0.1
-0.0
+0.2
-1.0
carbon source
butyrate (C)
-0.3
-0.2
+0.2
-0.0
-0.6
carbon source
adipate (C)
+0.1
-0.3
+0.1
-0.4
-0.3
carbon source
succinate (C)
+0.1
-0.3
+0.2
-0.2
-0.5
carbon source
adipate (C)
+0.0
-0.6
+0.0
-0.2
+0.2
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.3
-0.1
+0.3
-0.6
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
+0.2
-0.5
-0.0
+0.2
-0.5
carbon source
Malonic (C)
+0.0
+0.3
-0.1
+0.1
-0.9
carbon source
Malonic (C)
+0.0
-0.3
+0.2
+0.2
-0.4
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-0.0
+0.3
+0.1
-0.3
-0.5
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
+0.3
-0.2
+0.1
+0.1
-0.5
carbon source
2-Deoxy-D-ribonic lithium salt (C)
-0.0
+0.2
+0.1
+0.1
-0.7
carbon source
Valeric (C)
+0.1
+0.4
+0.0
+0.0
-0.8
carbon source
2'-Deoxyinosine 10 mM (C)
+0.0
-0.3
-0.5
+0.3
+0.4
carbon source
2-Deoxy-D-Ribose 10 mM (C)
+0.1
+0.2
+0.2
+0.1
-0.5
carbon source
Deoxyribonucleic from herring sperm 10 mg/mL (C)
-0.0
-0.3
+0.8
+0.0
-0.0
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
+0.4
-0.2
+0.1
+0.1
+0.4
ecofab
LB in EcoFAB_3.5mL
+0.1
+0.0
+0.2
+0.3
+0.4
carbon source
2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
+0.0
-0.0
+0.3
+0.2
+0.5
carbon source
Deoxyribonucleic from herring sperm 10 mg/mL (C)
-0.0
-0.2
+0.9
+0.6
+0.4
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