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Fitness for 5 genes in
Paraburkholderia bryophila 376MFSha3.1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
H281DRAFT_02054 and H281DRAFT_02055 are separated by 334 nucleotides
H281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotides
H281DRAFT_02056 and H281DRAFT_02057 are separated by 180 nucleotides
H281DRAFT_02057 and H281DRAFT_02058 are separated by 31 nucleotides
H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115
_02054
H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094
_02055
H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426
_02056
H281DRAFT_02057: H281DRAFT_02057 - VanZ like family protein, at 179,607 to 180,770
_02057
H281DRAFT_02058: H281DRAFT_02058 - cholesterol transport system auxiliary component, at 180,802 to 181,443
_02058
Group
Condition
H281DRAFT
_02054
H281DRAFT
_02055
H281DRAFT
_02056
H281DRAFT
_02057
H281DRAFT
_02058
phage
Bu1_10
-1.4
+0.1
+0.2
-0.0
-1.3
carbon source
Azelaic (C)
-0.1
-0.5
-0.4
-0.1
-1.1
in planta
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.2
-0.1
+0.2
-0.1
-1.9
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-0.8
+0.1
-0.4
-0.0
-0.9
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
-0.0
-0.7
-0.5
-0.1
-0.6
carbon source
Hexanoic (C)
-0.9
-0.1
-0.4
-0.1
-0.3
carbon source
propionate (C)
-0.5
+0.2
-0.6
-0.1
-0.6
carbon source
Phenylacetic (C)
+0.9
+0.1
-0.5
-0.0
-1.9
phage
Bu1_100
-1.3
+0.1
+0.5
-0.1
-0.7
carbon source
D-Glucose (C)
+0.2
-0.3
-0.3
-0.2
-0.6
carbon source
adipate (C)
-0.7
-0.1
-0.4
-0.3
+0.3
carbon source
Malonic (C)
-0.3
+0.1
-1.0
+0.0
+0.3
carbon source
2-Deoxy-D-ribonic lithium salt 10 mM (C)
+0.2
-0.5
+0.3
-0.2
-0.7
carbon source
Malonic (C)
-0.3
-0.2
-0.9
-0.1
+0.6
carbon source
p-Coumaric (C)
+0.2
+0.0
+0.2
+0.0
-1.2
carbon source
2'-Deoxyinosine 10 mM (C)
+0.6
-0.4
+0.1
+0.1
-0.8
phage
Bu1_100
-1.7
-0.1
+0.3
+0.2
+0.9
carbon source
D-Glucose 20 mM (C)
+0.3
-0.8
-0.3
+0.0
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+1.3
-0.5
-0.5
-0.1
-0.3
carbon source
Phenylacetic (C)
+1.0
+0.1
+0.1
-0.1
-1.0
carbon source
2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
+0.7
-0.2
+0.1
+0.2
-0.7
supernatant
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-0.5
+0.1
+0.2
-0.4
+0.7
carbon source
D,L-Lactate (C)
+0.2
-0.5
-0.2
+0.1
+0.7
carbon source
2-Deoxyadenosine 5-monophosphate 5 mM (C)
+0.6
-0.6
-0.2
+0.1
+0.8
carbon source
Hexanoic (C)
-0.2
-0.5
+0.4
+0.2
+1.0
carbon source
2'-Deoxyinosine 10 mM (C)
+0.7
-0.6
-0.1
-0.0
+0.8
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.0
-0.3
-0.2
-0.0
+1.4
carbon source
2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
+0.6
-0.4
+0.0
-0.1
+0.8
carbon source
D-Glucose (C)
+0.2
-0.1
-0.4
+0.1
+1.4
carbon source
2'-Deoxyinosine 5 mM (C)
+0.6
+0.1
+0.3
-0.0
+0.9
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