Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01997 and H281DRAFT_01998 are separated by 18 nucleotidesH281DRAFT_01998 and H281DRAFT_01999 overlap by 28 nucleotidesH281DRAFT_01999 and H281DRAFT_02000 are separated by 114 nucleotidesH281DRAFT_02000 and H281DRAFT_02001 are separated by 21 nucleotides H281DRAFT_01997: H281DRAFT_01997 - comF family protein, at 116,025 to 116,726 _01997 H281DRAFT_01998: H281DRAFT_01998 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 116,745 to 117,215 _01998 H281DRAFT_01999: H281DRAFT_01999 - O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain, at 117,188 to 117,736 _01999 H281DRAFT_02000: H281DRAFT_02000 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 117,851 to 118,849 _02000 H281DRAFT_02001: H281DRAFT_02001 - protein translocase subunit secB, at 118,871 to 119,341 _02001
Group Condition H281DRAFT_01997 H281DRAFT_01998 H281DRAFT_01999 H281DRAFT_02000 H281DRAFT_02001
carbon source Protocatechuic Acid (C) -0.2 +0.3 -0.6 -5.0 -2.0
carbon source D,L-Lactate (C) -0.0 -0.2 +0.1 -5.5 -1.4
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.0 +0.2 -5.3 -1.7
carbon source D,L-Lactate (C) -0.0 -0.2 +0.1 -5.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.2 -0.1 -4.7 -2.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 +0.1 -0.1 -4.3 -1.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.1 -0.0 -4.1 -1.9
carbon source Phenylacetic (C) +0.1 +0.1 -0.1 -6.3 -0.2
carbon source Protocatechuic Acid (C) -0.2 -0.2 -0.3 -3.7 -1.6
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.0 -0.1 -3.4 -2.0
carbon source D,L-Lactate (C) -0.1 -0.1 -0.2 -4.1 -1.0
carbon source Hydroxy-L-Proline (C) +0.0 +0.0 +0.1 -4.5 -0.9
carbon source Protocatechuic Acid (C) -0.1 +0.1 +0.1 -4.3 -1.1
carbon source Gallic Acid (C) +0.2 +0.1 +0.1 -4.7 -0.9
carbon source succinate (C) -0.0 +0.2 -0.6 -3.0 -1.7
carbon source D,L-Lactate (C) -0.0 -0.1 -0.0 -3.9 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.3 +0.7 -3.4 -2.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.1 +0.1 -3.4 -1.5
carbon source 2-furoic (C) -0.1 +0.1 -0.2 -4.2 -0.4
carbon source L-Glutamic (C) -0.1 -0.1 +0.1 -4.5 -0.2
carbon source 3-Hydroxypropionate (C) -0.1 +0.1 -0.3 -4.7 +0.4
carbon source D-Galactose (C) +0.0 +0.4 +0.1 -4.6 -0.3
carbon source Protocatechuic Acid (C) +0.1 +0.0 +0.5 -4.4 -0.5
carbon source Dodecandioic (C) -0.0 +0.3 -0.3 -4.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.2 -0.1 -3.2 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.2 +0.3 -2.8 -1.6
carbon source 2-Deoxy-D-Ribose (C) +0.1 +0.1 +0.3 -4.2 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.2 +0.4 -0.2 -3.8 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.3 +0.6 -3.1 -0.6
carbon source Malonic (C) +0.1 +0.2 +0.2 -4.0 +0.3
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