Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01926 and H281DRAFT_01927 are separated by 178 nucleotidesH281DRAFT_01927 and H281DRAFT_01928 are separated by 171 nucleotidesH281DRAFT_01928 and H281DRAFT_01929 are separated by 326 nucleotidesH281DRAFT_01929 and H281DRAFT_01930 are separated by 139 nucleotides H281DRAFT_01926: H281DRAFT_01926 - lipopolysaccharide export system ATP-binding protein, at 43,169 to 43,954 _01926 H281DRAFT_01927: H281DRAFT_01927 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 44,133 to 45,647 _01927 H281DRAFT_01928: H281DRAFT_01928 - sigma 54 modulation protein /SSU ribosomal protein S30P, at 45,819 to 46,175 _01928 H281DRAFT_01929: H281DRAFT_01929 - PTS IIA-like nitrogen-regulatory protein PtsN, at 46,502 to 47,017 _01929 H281DRAFT_01930: H281DRAFT_01930 - Hpr(Ser) kinase/phosphatase, at 47,157 to 48,125 _01930
Group Condition H281DRAFT_01926 H281DRAFT_01927 H281DRAFT_01928 H281DRAFT_01929 H281DRAFT_01930
carbon source succinate (C) N.D. -4.4 -0.1 N.D. N.D.
carbon source propionate (C) N.D. -4.0 -0.0 N.D. N.D.
carbon source succinate (C) N.D. -4.0 -0.0 N.D. N.D.
carbon source propionate (C) N.D. -4.0 +0.1 N.D. N.D.
carbon source propionate (C) N.D. -3.5 -0.3 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -3.2 -0.2 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -2.8 -0.4 N.D. N.D.
carbon source Valeric (C) N.D. -2.8 -0.2 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -2.5 -0.1 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -2.5 +0.0 N.D. N.D.
carbon source Valeric (C) N.D. -2.0 -0.3 N.D. N.D.
carbon source propionate (C) N.D. -2.0 +0.1 N.D. N.D.
carbon source Phenylacetic (C) N.D. -2.0 +0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 -0.5 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. -1.4 -0.3 N.D. N.D.
carbon source Phenylacetic (C) N.D. -1.7 -0.0 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -1.4 -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.5 -0.1 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -1.4 +0.1 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. -1.4 +0.2 N.D. N.D.
carbon source Gallic Acid (C) N.D. -1.3 +0.2 N.D. N.D.
carbon source D-Glucose 20 mM (C) N.D. -1.0 +0.5 N.D. N.D.
carbon source Suberic (C) N.D. +1.0 -0.8 N.D. N.D.
carbon source Pimelic (C) N.D. +1.0 -0.5 N.D. N.D.
carbon source Dodecandioic (C) N.D. +2.3 -0.6 N.D. N.D.
carbon source adipate (C) N.D. +2.8 -1.0 N.D. N.D.
carbon source butyrate (C) N.D. +2.4 -0.3 N.D. N.D.
carbon source Hydroxy-L-Proline (C) N.D. +2.2 -0.1 N.D. N.D.
carbon source adipate (C) N.D. +2.8 -0.5 N.D. N.D.
carbon source butyrate (C) N.D. +2.6 -0.2 N.D. N.D.
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