Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01915 and H281DRAFT_01916 are separated by 384 nucleotidesH281DRAFT_01916 and H281DRAFT_01917 are separated by 76 nucleotidesH281DRAFT_01917 and H281DRAFT_01918 are separated by 95 nucleotidesH281DRAFT_01918 and H281DRAFT_01919 are separated by 52 nucleotides H281DRAFT_01915: H281DRAFT_01915 - iron complex outermembrane recepter protein, at 31,108 to 33,231 _01915 H281DRAFT_01916: H281DRAFT_01916 - Uncharacterized iron-regulated membrane protein, at 33,616 to 34,881 _01916 H281DRAFT_01917: H281DRAFT_01917 - formyltetrahydrofolate deformylase, at 34,958 to 35,827 _01917 H281DRAFT_01918: H281DRAFT_01918 - Isopentenyldiphosphate isomerase, at 35,923 to 36,774 _01918 H281DRAFT_01919: H281DRAFT_01919 - Threonine/homoserine/homoserine lactone efflux protein, at 36,827 to 37,441 _01919
Group Condition H281DRAFT_01915 H281DRAFT_01916 H281DRAFT_01917 H281DRAFT_01918 H281DRAFT_01919
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.0 N.D. -0.1 -0.8
carbon source 4-Hydroxybenzoic Acid (C) +0.0 +0.0 N.D. +0.2 -1.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.3 -0.5 N.D. -0.2 +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 +0.3 N.D. +0.0 -0.5
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +0.3 N.D. +0.2 -0.4
carbon source D-Glucose (C) +0.2 -0.2 N.D. -0.1 +0.4
carbon source adipate (C) -0.1 +0.1 N.D. -0.2 +0.6
carbon source Sebacic (C) +0.1 +0.2 N.D. -0.3 +0.4
carbon source adipate (C) +0.1 +0.1 N.D. -0.3 +0.6
carbon source succinate (C) +0.1 -0.2 N.D. -0.1 +0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 -0.2 N.D. -0.1 +0.7
carbon source butyrate (C) +0.0 +0.2 N.D. -0.1 +0.6
carbon source butyrate (C) +0.1 -0.0 N.D. -0.1 +0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.1 -0.2 N.D. +0.2 +0.6
carbon source 2'-Deoxyinosine 10 mM (C) -0.1 +0.2 N.D. +0.3 +0.4
carbon source Valeric (C) +0.1 +0.2 N.D. -0.1 +0.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 -0.0 N.D. +0.1 +0.6
carbon source acetate (C) +0.1 +0.2 N.D. +0.1 +0.5
ecofab LB in EcoFAB_3.5mL +0.1 +0.2 N.D. +0.1 +0.6
carbon source D-Glucose (C) +0.1 +0.1 N.D. -0.2 +0.9
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 +0.1 N.D. +0.0 +0.7
carbon source Hexanoic (C) +0.2 +0.5 N.D. -0.4 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 +0.1 N.D. +0.0 +0.9
carbon source D-Glucose (C) +0.1 +0.1 N.D. +0.1 +0.8
carbon source Dodecandioic (C) +0.1 +0.0 N.D. -0.0 +1.0
carbon source 2-Deoxy-D-Ribose (C) +0.2 +0.1 N.D. +0.3 +0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 +0.1 N.D. -0.2 +1.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 +0.1 N.D. -0.2 +1.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.0 N.D. +0.1 +1.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 +0.2 N.D. +0.0 +1.6
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