Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 128 experiments or choose conditions or try the comparative fitness browser

500 ntH281DRAFT_01811 and H281DRAFT_01812 are separated by 100 nucleotidesH281DRAFT_01812 and H281DRAFT_01813 are separated by 102 nucleotidesH281DRAFT_01813 and H281DRAFT_01814 are separated by 110 nucleotidesH281DRAFT_01814 and H281DRAFT_01815 overlap by 4 nucleotides H281DRAFT_01811: H281DRAFT_01811 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 712,587 to 713,363 _01811 H281DRAFT_01812: H281DRAFT_01812 - Short-chain dehydrogenase, at 713,464 to 714,213 _01812 H281DRAFT_01813: H281DRAFT_01813 - transcriptional regulator, AraC family, at 714,316 to 715,236 _01813 H281DRAFT_01814: H281DRAFT_01814 - transcriptional regulator, XRE family with cupin sensor, at 715,347 to 715,937 _01814 H281DRAFT_01815: H281DRAFT_01815 - L-amino acid N-acyltransferase YncA, at 715,934 to 716,464 _01815
Group Condition H281DRAFT_01811 H281DRAFT_01812 H281DRAFT_01813 H281DRAFT_01814 H281DRAFT_01815
ecofab LB in EcoFAB_3.5mL -1.4 -0.0 -0.5 -0.4 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 -0.6 -0.1 -0.5 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.3 -1.0 -0.2 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 -0.6 -0.1 -1.0 -0.3
carbon source adipate (C) -0.9 +0.2 -0.5 -0.1 -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.6 -0.2 -0.5 -0.7 +0.1
carbon source Malonic (C) -0.5 -0.5 -0.2 -0.2 -0.3
carbon source Sebacic (C) -0.9 -1.2 +0.0 +0.3 +0.1
phage Bu1_100 +0.1 -0.8 +0.1 -1.5 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.5 -0.6 -0.2 -1.1 -0.1
carbon source 2-furoic (C) -0.6 -0.5 -0.1 -0.5 +0.1
carbon source Protocatechuic Acid (C) +0.2 +0.0 -0.4 -0.7 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.4 -0.4 -0.1 -0.7
carbon source Gallic Acid (C) -0.4 -0.4 -0.5 -0.3 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -0.3 -0.5 -0.2 +0.3
carbon source Glycerol (C) -0.7 +0.1 -0.2 -0.6 +0.2
carbon source propionate (C) -0.7 -0.7 -0.2 +0.3 +0.1
carbon source Malonic (C) +0.4 -0.4 -0.7 -0.4 +0.1
carbon source Malonic (C) +0.3 -0.3 -0.8 -0.4 +0.2
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 +0.5 +0.1 -0.2 -0.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.9 +0.4 -0.1 +0.3 -0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.0 +0.6 -0.2 +0.2 -0.4
carbon source butyrate (C) +0.9 -0.2 -0.2 -0.6 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 +0.2 -0.6 +1.3 -0.5
lb LB +0.3 +0.1 -0.4 +0.7 -0.3
carbon source Valeric (C) +0.9 -0.5 +0.2 +0.4 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 +1.1 +0.3 -0.7 +0.1
phage Bu1_100 -0.1 +1.6 +0.5 -0.6 -0.3
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.3 +0.7 +0.0 +1.0 -0.1
control NoPhageControl +0.8 -0.5 +0.6 +0.4 +0.4
remove
H281DRAFT_01811
plot		 remove
H281DRAFT_01812
plot		 remove
H281DRAFT_01813		 remove
H281DRAFT_01814
plot		 remove
H281DRAFT_01815
plot