Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01654 and H281DRAFT_01655 are separated by 66 nucleotidesH281DRAFT_01655 and H281DRAFT_01656 are separated by 70 nucleotidesH281DRAFT_01656 and H281DRAFT_01657 are separated by 4 nucleotidesH281DRAFT_01657 and H281DRAFT_01658 overlap by 4 nucleotides H281DRAFT_01654: H281DRAFT_01654 - 3-phenylpropionate/cinnamic acid dioxygenase, small subunit, at 536,770 to 537,270 _01654 H281DRAFT_01655: H281DRAFT_01655 - 4-oxalocrotonate tautomerase family enzyme, at 537,337 to 537,711 _01655 H281DRAFT_01656: H281DRAFT_01656 - hypothetical protein, at 537,782 to 538,159 _01656 H281DRAFT_01657: H281DRAFT_01657 - SnoaL-like domain-containing protein, at 538,164 to 538,679 _01657 H281DRAFT_01658: H281DRAFT_01658 - amidase, at 538,676 to 539,818 _01658
Group Condition H281DRAFT_01654 H281DRAFT_01655 H281DRAFT_01656 H281DRAFT_01657 H281DRAFT_01658
carbon source adipate (C) -1.5 N.D. -1.5 -0.2 -0.3
carbon source Malonic (C) -0.8 N.D. -1.3 -0.6 -0.5
carbon source adipate (C) -0.6 N.D. -1.3 -1.0 -0.1
carbon source Valeric (C) -0.1 N.D. -0.8 -0.7 -0.5
carbon source acetate (C) -0.2 N.D. -0.8 -0.6 -0.6
carbon source propionate (C) -0.8 N.D. -0.0 -0.3 -0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.6 N.D. -0.6 +0.3 -0.1
carbon source Dodecandioic (C) +0.2 N.D. -0.3 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.1 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.8 +0.1 +0.2
carbon source D-Glucose (C) -0.7 N.D. +0.0 +0.4 -0.4
phage Bu1_10 +0.7 N.D. +0.0 -0.6 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 N.D. +0.3 -0.7 +0.4
phage Bu1_100 -0.4 N.D. +1.5 -1.4 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 N.D. -0.8 +0.5 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.3 N.D. +0.3 -0.7 +0.4
carbon source 3-hydroxybutyric (C) -0.4 N.D. -0.4 +0.4 +0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. +0.6 -0.7 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. +0.1 -0.7 -0.1
carbon source Protocatechuic Acid (C) +0.5 N.D. -0.5 +0.4 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 N.D. +0.3 -0.7 +0.4
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 N.D. +0.4 -0.3 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 N.D. +0.2 +0.7 -0.4
carbon source 2-Deoxy-D-Ribose (C) +0.3 N.D. +0.5 +0.1 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 N.D. +0.6 -0.4 +0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.3 N.D. +0.6 -0.2 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. +0.3 -0.1 +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.8 N.D. +0.3 -0.7 +1.0
carbon source Gallic Acid (C) +0.6 N.D. +0.5 +0.3 +0.1
ecofab LB in EcoFAB_3.5mL +1.4 N.D. +0.2 -0.3 +0.5
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