Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01401 and H281DRAFT_01402 are separated by 60 nucleotidesH281DRAFT_01402 and H281DRAFT_01403 are separated by 72 nucleotidesH281DRAFT_01403 and H281DRAFT_01404 are separated by 111 nucleotidesH281DRAFT_01404 and H281DRAFT_01405 are separated by 38 nucleotides H281DRAFT_01401: H281DRAFT_01401 - Polyisoprenoid-binding protein YceI, at 256,524 to 257,087 _01401 H281DRAFT_01402: H281DRAFT_01402 - Polyisoprenoid-binding protein YceI, at 257,148 to 257,726 _01402 H281DRAFT_01403: H281DRAFT_01403 - hypothetical protein, at 257,799 to 258,785 _01403 H281DRAFT_01404: H281DRAFT_01404 - hypothetical protein, at 258,897 to 258,995 _01404 H281DRAFT_01405: H281DRAFT_01405 - hypothetical protein, at 259,034 to 259,732 _01405
Group Condition H281DRAFT_01401 H281DRAFT_01402 H281DRAFT_01403 H281DRAFT_01404 H281DRAFT_01405
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.0 N.D. -0.3 N.D. -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.9 N.D. -0.2 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. -0.7 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -1.0 N.D. +0.4 N.D. -0.0
carbon source D,L-Lactate (C) +0.3 N.D. -0.8 N.D. -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.9 N.D. +0.7 N.D. -0.3
carbon source Malonic (C) -0.8 N.D. +0.5 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.7 N.D. +0.6 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.6 N.D. -0.4 N.D. -0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.8 N.D. +0.7 N.D. +0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 N.D. +0.6 N.D. -0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. +0.3 N.D. +0.4
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.5 N.D. +0.7 N.D. -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 N.D. +0.7 N.D. +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 N.D. +0.8 N.D. +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.5 N.D. +0.9 N.D. +0.0
carbon source D-Glucose 20 mM (C) -0.4 N.D. +0.7 N.D. +0.1
carbon source succinate (C) -0.0 N.D. +1.0 N.D. -0.5
ecofab LB in EcoFAB_3.5mL -0.2 N.D. +1.1 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.7 N.D. +0.2 N.D. -0.3
carbon source Hexanoic (C) +0.2 N.D. +0.9 N.D. -0.3
carbon source Protocatechuic Acid (C) +0.6 N.D. +0.4 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.8 N.D. +0.4 N.D. -0.3
carbon source butyrate (C) +0.3 N.D. +0.8 N.D. -0.1
carbon source adipate (C) +0.7 N.D. +0.4 N.D. +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 N.D. +0.8 N.D. +0.0
carbon source butyrate (C) +0.8 N.D. +0.6 N.D. +0.0
carbon source propionate (C) +0.9 N.D. +0.7 N.D. -0.1
carbon source propionate (C) +0.7 N.D. +0.7 N.D. +0.1
carbon source Valeric (C) +0.9 N.D. +0.6 N.D. +0.0
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