Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01389 and H281DRAFT_01390 are separated by 197 nucleotidesH281DRAFT_01390 and H281DRAFT_01391 are separated by 22 nucleotidesH281DRAFT_01391 and H281DRAFT_01392 overlap by 4 nucleotidesH281DRAFT_01392 and H281DRAFT_01393 are separated by 16 nucleotides H281DRAFT_01389: H281DRAFT_01389 - PAS domain S-box-containing protein, at 240,969 to 243,668 _01389 H281DRAFT_01390: H281DRAFT_01390 - hypothetical protein, at 243,866 to 244,132 _01390 H281DRAFT_01391: H281DRAFT_01391 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 244,155 to 245,549 _01391 H281DRAFT_01392: H281DRAFT_01392 - two component transcriptional regulator, winged helix family, at 245,546 to 246,259 _01392 H281DRAFT_01393: H281DRAFT_01393 - hydrophobic/amphiphilic exporter-1, HAE1 family, at 246,276 to 249,407 _01393
Group Condition H281DRAFT_01389 H281DRAFT_01390 H281DRAFT_01391 H281DRAFT_01392 H281DRAFT_01393
phage Bu1_100 +0.0 -4.6 +0.5 N.D. -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -1.9 -1.2 N.D. -0.2
carbon source 2-Deoxy-D-Ribose (C) +0.1 -1.2 -0.6 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.4 -0.4 -0.9 N.D. -0.2
carbon source Phenylacetic (C) +0.1 -1.0 -0.3 N.D. -0.2
carbon source D-Glucose (C) -0.1 -0.8 -0.3 N.D. -0.2
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.1 -0.3 N.D. +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -1.0 +0.5 N.D. -0.6
carbon source D-Glucose (C) -0.2 -0.9 +0.2 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 +0.5 -0.7 N.D. -0.3
carbon source butyrate (C) +0.5 -1.1 +0.1 N.D. +0.1
carbon source propionate (C) +0.1 -0.8 +0.2 N.D. +0.3
phage Bu1_10 +0.4 -0.9 +0.6 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.8 +0.4 N.D. +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 +0.9 -0.1 N.D. -0.2
carbon source Protocatechuic Acid (C) -0.1 +0.9 -0.2 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 +0.6 +0.3 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 +1.0 +0.2 N.D. -0.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.1 +1.3 -0.1 N.D. +0.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 +0.8 +0.5 N.D. +0.2
carbon source D-Glucose 20 mM (C) +0.2 +0.7 +0.3 N.D. +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 +1.3 +0.3 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.0 +1.2 +0.2 N.D. -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.0 +1.0 +0.5 N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 +1.3 +0.1 N.D. +0.2
carbon source Hexanoic (C) +0.2 +0.8 +0.5 N.D. +0.3
carbon source 2'-Deoxyinosine 10 mM (C) +0.0 +1.6 +0.1 N.D. +0.1
carbon source adipate (C) -0.0 +1.1 +0.8 N.D. +0.1
ecofab LB in EcoFAB_3.5mL +0.1 +1.1 +0.4 N.D. +0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +1.3 +0.8 N.D. +0.1
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