Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01375 and H281DRAFT_01376 are separated by 72 nucleotidesH281DRAFT_01376 and H281DRAFT_01377 are separated by 331 nucleotidesH281DRAFT_01377 and H281DRAFT_01378 are separated by 62 nucleotidesH281DRAFT_01378 and H281DRAFT_01379 are separated by 77 nucleotides H281DRAFT_01375: H281DRAFT_01375 - LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway, at 219,702 to 221,024 _01375 H281DRAFT_01376: H281DRAFT_01376 - 4-oxalomesaconate tautomerase, at 221,097 to 222,203 _01376 H281DRAFT_01377: H281DRAFT_01377 - hypothetical protein, at 222,535 to 222,825 _01377 H281DRAFT_01378: H281DRAFT_01378 - hypothetical protein, at 222,888 to 223,031 _01378 H281DRAFT_01379: H281DRAFT_01379 - diguanylate cyclase/phosphodiesterase, at 223,109 to 225,451 _01379
Group Condition H281DRAFT_01375 H281DRAFT_01376 H281DRAFT_01377 H281DRAFT_01378 H281DRAFT_01379
carbon source Gallic Acid (C) -3.2 -5.0 +0.6 N.D. +0.1
carbon source Hydroxy-L-Proline (C) -2.3 -1.9 +0.3 N.D. -0.0
phage Bu1_10 -0.2 +0.1 -2.4 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.0 -1.6 N.D. -0.0
carbon source Gallic Acid (C) -0.9 -1.0 +0.6 N.D. -0.1
phage Bu1_100 -0.2 -0.2 -0.9 N.D. +0.1
phage Bu1_100 -0.4 -0.1 -0.7 N.D. +0.2
carbon source propionate (C) +0.3 +0.1 -1.3 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.5 +0.5 N.D. +0.0
carbon source Hexanoic (C) -0.5 -0.5 +0.8 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.1 +0.3 N.D. +0.1
ecofab LB in EcoFAB_3.5mL -0.3 +0.5 -0.3 N.D. +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.7 -0.0 +0.8 N.D. -0.0
carbon source butyrate (C) -0.0 -0.3 +0.9 N.D. -0.2
carbon source L-Glutamic (C) +0.2 +0.2 +0.4 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.3 +0.3 +0.5 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 +0.6 +0.1 N.D. +0.1
carbon source D-Glucose (C) +0.5 +0.4 -0.3 N.D. -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 +0.1 +0.8 N.D. +0.2
carbon source Malonic (C) -0.2 +0.1 +0.8 N.D. -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 +0.3 +0.6 N.D. -0.1
carbon source adipate (C) +0.6 -0.2 +0.6 N.D. -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.2 +0.8 N.D. +0.2
carbon source propionate (C) +0.5 -0.0 +0.4 N.D. +0.3
carbon source Azelaic (C) +0.4 -0.2 +0.6 N.D. +0.4
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +0.5 +0.5 N.D. +0.1
carbon source 2-furoic (C) +0.3 +0.0 +0.7 N.D. +0.2
carbon source succinate (C) +0.7 +0.0 +0.6 N.D. +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 +0.5 +0.4 N.D. +0.3
carbon source Sebacic (C) +0.5 +0.6 +1.0 N.D. +0.2
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