Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotidesH281DRAFT_01373 and H281DRAFT_01374 are separated by 307 nucleotidesH281DRAFT_01374 and H281DRAFT_01375 overlap by 4 nucleotidesH281DRAFT_01375 and H281DRAFT_01376 are separated by 72 nucleotides H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761 _01372 H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603 _01373 H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705 _01374 H281DRAFT_01375: H281DRAFT_01375 - LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway, at 219,702 to 221,024 _01375 H281DRAFT_01376: H281DRAFT_01376 - 4-oxalomesaconate tautomerase, at 221,097 to 222,203 _01376
Group Condition H281DRAFT_01372 H281DRAFT_01373 H281DRAFT_01374 H281DRAFT_01375 H281DRAFT_01376
carbon source Gallic Acid (C) -3.9 -3.0 -1.3 -3.2 -5.0
carbon source Hydroxy-L-Proline (C) -1.7 -2.5 -1.0 -2.3 -1.9
carbon source Gallic Acid (C) -0.7 -0.6 -1.1 -0.9 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.7 -0.2 -0.4 -0.3
carbon source D,L-Lactate (C) -0.4 -0.1 -0.6 -0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.5 -0.2 -0.3 -0.1
carbon source Hexanoic (C) -0.1 -0.1 -0.5 -0.5 -0.5
phage Bu1_100 +0.3 -1.3 -0.1 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.2 +0.2 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.5 -0.9 -0.1 +0.4
carbon source adipate (C) -0.6 -0.0 -1.0 +0.3 +0.4
carbon source Dodecandioic (C) -0.6 +0.3 -0.6 +0.1 +0.2
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.7 +0.6 +0.0 -0.1
lb LB -0.1 -0.8 +0.5 +0.1 +0.2
carbon source Malonic (C) +0.3 -0.5 -0.4 +0.4 +0.1
carbon source succinate (C) +0.5 -0.5 -0.3 +0.4 -0.2
ecofab LB in EcoFAB_3.5mL -0.8 +0.2 +0.4 -0.3 +0.5
carbon source propionate (C) +0.6 -0.3 -0.5 +0.3 +0.1
carbon source D-Glucose (C) +0.8 -0.4 +0.1 +0.3 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.5 +0.2 +0.5 -0.5 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.4 +0.6 +0.3 +0.2 +0.3
carbon source acetate (C) +0.7 -0.4 -0.1 +0.4 +0.4
carbon source butyrate (C) +0.6 +0.4 -0.4 +0.4 +0.1
carbon source 4-Methyl-2-oxopentanoic (C) +0.6 +0.4 -0.2 +0.2 +0.2
carbon source succinate (C) +0.3 +0.5 -0.4 +0.7 +0.0
carbon source Azelaic (C) +0.8 +0.9 -0.6 +0.4 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 -0.2 +0.9 +0.1 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.3 -0.5 +0.8 -0.1 -0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.5 +0.6 +0.3 -0.2 +0.3
carbon source Sebacic (C) -0.1 +0.5 +0.5 +0.5 +0.6
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